BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0504200 Os10g0504200|AK111107
(230 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25570.1 | chr4:13053887-13055518 REVERSE LENGTH=240 197 4e-51
AT5G38630.1 | chr5:15466141-15467511 FORWARD LENGTH=231 158 2e-39
AT1G14730.1 | chr1:5073244-5074568 FORWARD LENGTH=225 115 2e-26
AT1G26100.1 | chr1:9022716-9024081 REVERSE LENGTH=237 98 4e-21
>AT4G25570.1 | chr4:13053887-13055518 REVERSE LENGTH=240
Length = 239
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 125/196 (63%), Gaps = 1/196 (0%)
Query: 20 MVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMV 79
MVL+W + +RGGLA + TNK LIFN+HPVLMLIGFIILG EAI+ YK P K++
Sbjct: 24 MVLVWSISYRGGLAWEA-TNKNLIFNLHPVLMLIGFIILGGEAIISYKSLPLEKPVKKLI 82
Query: 80 XXXXXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFFP 139
G GI AAFK HNES I NLYSLHSW+G+G I LYG QW++ F+ FFFP
Sbjct: 83 HLILHAIALALGIFGICAAFKNHNESHIPNLYSLHSWIGIGVISLYGFQWVYSFIVFFFP 142
Query: 140 GASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGGLGRYSSEALLVNFTAV 199
G S +L+ LPWH GL VYI TFLE GGL +Y SEA L+NFTA+
Sbjct: 143 GGSTNLKSGLLPWHAMLGLFVYILAVGNAALGFLEKLTFLENGGLDKYGSEAFLINFTAI 202
Query: 200 LVILLGSAVVMYVTAP 215
+ IL G+ VV+ +A
Sbjct: 203 ITILFGAFVVLTASAE 218
>AT5G38630.1 | chr5:15466141-15467511 FORWARD LENGTH=231
Length = 230
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 19 GMVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKM 78
+VL W VH+RGGLALSS NK IFNVHPV+M+IG I+ EA++ YK + K+
Sbjct: 24 ALVLTWTVHYRGGLALSSD-NKDHIFNVHPVMMVIGLILFNGEAMLAYKSVQGTKNLKKL 82
Query: 79 VXXXXXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFF 138
V +G++AA KFH + GI N YSLHSW+GL + L+ QW GFVT+++
Sbjct: 83 VHLTLQLTAFILSLIGVWAALKFHIDKGIENFYSLHSWLGLACLFLFAFQWAAGFVTYWY 142
Query: 139 PGASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGG-LGRYSSEALLVNFT 197
PG S + R + +PWHV G+ +Y TFL+ + RYS+EA+LVN
Sbjct: 143 PGGSRNSRASLMPWHVFLGISIYALALVTATTGILEKVTFLQVNQVITRYSTEAMLVNTM 202
Query: 198 AVLVILLGSAVVMYVTAPMHNEHS 221
VL+++LG V++ V P+ +
Sbjct: 203 GVLILILGGFVILGVVTPVSGKDQ 226
>AT1G14730.1 | chr1:5073244-5074568 FORWARD LENGTH=225
Length = 224
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 5/199 (2%)
Query: 20 MVLLWCVHFRGGLALSSPTNKGLIFNVHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMV 79
++L+W +H+R G+ S N + NVHP LM GF+ L +A+M YK H KMV
Sbjct: 31 LMLIWLLHYREGIEYGSD-NPLKVLNVHPFLMYCGFLFLVGQAMMTYKTAYASHQVQKMV 89
Query: 80 XXXXXXXXXXXGSVGIYAAFKFHNESGIANLYSLHSWVGLGTICLYGVQWIFGFVTFFFP 139
G VGI AAF+FH++ + ++ SLHSW+GL T L GVQW+FG TF P
Sbjct: 90 HGGLHLIGLVLGIVGICAAFRFHDKVNLKDMVSLHSWIGLTTFILLGVQWLFGAFTFLAP 149
Query: 140 GASPSLRRAALPWHVRSGLLVYIXXXXXXXXXXXXXXTFLEAGGLGRYSSEALLVNFTAV 199
+S R +PWHV G + T L ++E+ L+NF +
Sbjct: 150 QSSSGTRTRMMPWHVLGGRALLYMGIVAALTGLMQRATMLGQS----TNAESRLINFLGL 205
Query: 200 LVILLGSAVVMYVTAPMHN 218
++L G +V V +N
Sbjct: 206 AILLFGVSVDFSVALGRYN 224
>AT1G26100.1 | chr1:9022716-9024081 REVERSE LENGTH=237
Length = 236
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 100/199 (50%), Gaps = 9/199 (4%)
Query: 39 NKGLIFN-VHPVLMLIGFIILGSEAIMGYKIWPWGHDTNKMVXXXXXXXXXXXGSVGIYA 97
N GL ++ +HP+LM+IGFI++ EAI+ ++ P T K V GI+
Sbjct: 35 NLGLSYSTLHPLLMVIGFILVSGEAILIHRWLPGSRKTKKAVHLWLQGMALASAVFGIWT 94
Query: 98 AFKFHNESGI-ANLYSLHSWVGLGTICLYGVQWIFGFVTFFFPGASPSLRRAALPWHVRS 156
KFH + G+ AN YSLHSW+GL ++ L+ QW+ GF++F+ G + R LPWHV
Sbjct: 95 --KFHYQRGVFANFYSLHSWMGLLSVSLFAAQWVTGFMSFWHRGEVRTTRTTFLPWHVFL 152
Query: 157 GLLVYIXXXXXXXXXXXXXXTFLEAG-GLGRYSSEALLVNFTAVLVILLGSAVVMYVTAP 215
GL Y TFL+ + R SE++ VN + + LLG V+ P
Sbjct: 153 GLYTYGLAIATAETGLLEKLTFLQTKRNVPRRGSESMTVNGLGLGLALLGCIVITAAILP 212
Query: 216 MHNEHSHG----YSAVRKP 230
+ HS YS+ +P
Sbjct: 213 KYQSHSRDEKLVYSSQDRP 231
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.143 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,074,364
Number of extensions: 141175
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 4
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)