BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0499600 Os10g0499600|AK100791
         (192 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28100.4  | chr1:9802120-9803981 FORWARD LENGTH=291            122   9e-29

>AT1G28100.4 | chr1:9802120-9803981 FORWARD LENGTH=291
          Length = 290

 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 110/187 (58%), Gaps = 11/187 (5%)

Query: 1   EVGLPSHVATFSQ-TEADALRNKPLV------KSNSFLSLLGMRSTVSNQGNDREIEISE 53
           EVGLPS VA FS+ ++   L+N   V      ++  FL   G+ +T+S+  N  E+++SE
Sbjct: 106 EVGLPSQVARFSKVSDTLFLKNITAVPKQKRDRAFGFLDTFGLGTTLSHPENLMEVKVSE 165

Query: 54  TKGSCTRHLCNISVPLTGSHKHKWMGPAIRMSLPSFSGQIEDHPDLLKYSCQVECRVRPV 113
              + +  +CNI +    +    WMGPAI+M+LPSFSG    + +LLKYSC + CRVRPV
Sbjct: 166 VDSAASTDICNIQIRSDETKVGNWMGPAIKMALPSFSGNTIYNSNLLKYSCHLHCRVRPV 225

Query: 114 RPAKIWRPRITEPQECPDGKISSKGSEVLAEPDAQKHTVMVLLSKPILALEFNSLEMHVD 173
           RPA +      E ++  +   +S+ S      + ++ +  V+LSKPI+AL+F  L M V+
Sbjct: 226 RPAVVSGALEDETEKFTEQNHTSQES----LENERQLSKAVMLSKPIIALQFKCLTMQVE 281

Query: 174 APKIVIP 180
           AP ++ P
Sbjct: 282 APVVIYP 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,295,721
Number of extensions: 168811
Number of successful extensions: 372
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)