BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0497000 Os10g0497000|AK120408
(887 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11060.1 | chr1:3684568-3689537 FORWARD LENGTH=931 276 3e-74
AT1G61030.1 | chr1:22477969-22482080 FORWARD LENGTH=841 267 2e-71
>AT1G11060.1 | chr1:3684568-3689537 FORWARD LENGTH=931
Length = 930
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 198/305 (64%), Gaps = 2/305 (0%)
Query: 104 SLMEAEEYGEMMESVDEANFALDGLRATAPRRVRRASFLALLGICASAPRRRVLRAQGLV 163
+L+EA+E+GE+ME DE NFALDGLR R+RRAS +LL ICAS +RR LRAQG+
Sbjct: 152 TLLEAQEFGELMEHEDEVNFALDGLRKGHQLRIRRASLSSLLSICASQHQRRSLRAQGIS 211
Query: 164 QQIIDAILVLNIDDPPCTIGAAALLFVLASDVQENHLLDSESCVHFXXXXXXXXXXXXDS 223
Q IIDAILVL++DD P + AA L F L +D Q+ H ++S C+ F
Sbjct: 212 QSIIDAILVLSLDDIPSNLAAATLFFALTADGQDEHFMESPKCIKFLIKLLKPVIVTSTE 271
Query: 224 KAP-SIGSKLLGISK-VQMLNGSNKDSDCISEEILSKVEEILLSCQEIKSLDKDDKKTTR 281
P +IG KLL + K V K D S +ILS+V+E+L++C+E++ D +TTR
Sbjct: 272 GKPRNIGFKLLSLLKDVDAARDPVKMDDPSSSDILSRVQELLVNCKEMRLNDSYITETTR 331
Query: 282 PELCPKWLALLTMEKACLSAVSVEETSDTVSRVGGNFKETLRELGGLDSIFDVMMDCHST 341
PEL KW+ALL ME+AC+S +S ++TS +V + GGNFKE LRELGGLD++ +V+MDCH+
Sbjct: 332 PELSTKWVALLAMERACVSKISFDDTSGSVKKTGGNFKEKLRELGGLDAVLEVVMDCHAV 391
Query: 342 LENLIKDTSTSALDLNEGTSLQSAALLLKCLKILENATFLSDDNKTHLLNMSRKLYPKRS 401
+E ++ + S + + QS LLLKCLKI+ENATFLS DN+ HLL + L S
Sbjct: 392 MERWVEYDALSVQEKKDNLHKQSLMLLLKCLKIMENATFLSTDNQNHLLGFKKCLGSHDS 451
Query: 402 SLSFV 406
+SF
Sbjct: 452 RMSFT 456
Score = 242 bits (618), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 152/332 (45%), Positives = 200/332 (60%), Gaps = 39/332 (11%)
Query: 579 DDPFAFDDVDQEPSNWELL--------GPKKKSPQKHQDKSGNGVLVASHEPD------- 623
+DPFAFD D +PS W ++ KKK K L +S E
Sbjct: 611 EDPFAFDLEDYKPSKWAVVSVNQKKSRAQKKKGCYKQSKDESLYQLFSSQEESSNHRLNS 670
Query: 624 QPEDLNQSGTTSLFSAKDESSLLEDCLL-------ASVKVLMNLANDNPSGCELIASCGG 676
Q E N+ +TSL + + + E+CL +VKVLMNL NDN GC + C G
Sbjct: 671 QEESSNRDCSTSLQPSHCTNDIDEECLCLLFDCLLTAVKVLMNLTNDNVVGCRQVGGCRG 730
Query: 677 LNTMASLIMKHFPSFCFVVDNNYNTRDVNLDHELSSSQNSKAHQVKIKQLRDHELDFLVA 736
L +MA LI +HFPSF TR L E+ + +S HQ K K L D ELDFLVA
Sbjct: 731 LESMAELIARHFPSF---------TRS-QLFSEMEKTGSS--HQKKDKYLTDQELDFLVA 778
Query: 737 ILGLLVNLVEKDSLNRVRLSSARVPVDLSQNPQSEETQRDVIALLCSVFLASQGASEASG 796
ILGLLVNLVE+D +NR RL+SA VP+ ++ + +E+++++I LLCS+FL +QG++E
Sbjct: 779 ILGLLVNLVERDGVNRSRLASASVPI--TKPEELQESEQEMIPLLCSIFLTNQGSAETKE 836
Query: 797 TISP---DDEESLMQGAREAEMMIVEAYAALLLAFLSTESMKVRGAISSCLPNNSLKILV 853
+ DDEE++++G +EAE MIVEAY+ALLLAFLSTES +R +I LP +L ILV
Sbjct: 837 ETTTFTLDDEEAVLEGEKEAEKMIVEAYSALLLAFLSTESRSIRNSIKDYLPKRNLAILV 896
Query: 854 PALEKFVSFHLQLNMITEETHSAVTEVIEKCK 885
P LE+FV+FH+ LNMI ETH AV VIE CK
Sbjct: 897 PVLERFVAFHMTLNMIPPETHKAVMGVIESCK 928
>AT1G61030.1 | chr1:22477969-22482080 FORWARD LENGTH=841
Length = 840
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 199/305 (65%), Gaps = 2/305 (0%)
Query: 104 SLMEAEEYGEMMESVDEANFALDGLRATAPRRVRRASFLALLGICASAPRRRVLRAQGLV 163
+LMEA+E+GE++E+ DE NFALDGL+ R+RRA+ +LL IC S +RR LRA G+
Sbjct: 80 TLMEAQEFGELIENEDEVNFALDGLKKGHKVRIRRAALSSLLSICESQYQRRSLRALGIS 139
Query: 164 QQIIDAILVLNIDDPPCTIGAAALLFVLASDVQENHLLDSESCVHFXXXXXXXXXXXXDS 223
Q IIDAIL L +DD P + AA L FVL +D Q++H ++S + + F
Sbjct: 140 QSIIDAILGLCLDDIPSNLAAATLFFVLTTDGQDDHFMESPNSIKFLVKLLRPVVSASTK 199
Query: 224 KAP-SIGSKLLGISK-VQMLNGSNKDSDCISEEILSKVEEILLSCQEIKSLDKDDKKTTR 281
P +IGS+LL I K V + D S +I+ + +EIL++C+E++ +D + R
Sbjct: 200 VKPRNIGSRLLSIIKDVDAARDAASMHDLSSCDIIDRAQEILVNCKELRLIDSYKIERMR 259
Query: 282 PELCPKWLALLTMEKACLSAVSVEETSDTVSRVGGNFKETLRELGGLDSIFDVMMDCHST 341
PEL KW+ALL MEKACLS +S ++TS TV + GG FKE LRELGGLD++FDV+MDCH+
Sbjct: 260 PELSTKWVALLVMEKACLSKISFDDTSGTVKKSGGMFKEKLRELGGLDAVFDVVMDCHTV 319
Query: 342 LENLIKDTSTSALDLNEGTSLQSAALLLKCLKILENATFLSDDNKTHLLNMSRKLYPKRS 401
+E+ + + S D+ + + QS LLLKCLKI+ENATFLS +N+ HLL +++ + S
Sbjct: 320 MESWVTHDTLSVEDIKDDLNKQSLMLLLKCLKIMENATFLSTENQIHLLRLNKSMGSHES 379
Query: 402 SLSFV 406
LSF
Sbjct: 380 RLSFT 384
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/329 (43%), Positives = 195/329 (59%), Gaps = 39/329 (11%)
Query: 580 DPFAFDDVDQEPSNWELL------------GPKKKSPQKH------QDKSGNGVLVASHE 621
DPF+FD D PS W + + K ++ Q++S +G+
Sbjct: 528 DPFSFDLEDSGPSRWAVGKQKKSKGQKRKGSYRDKKDERSLQLFSSQEESNHGLNSQEES 587
Query: 622 PDQPEDLNQSGTTSLFSAKDESSLLEDCLLASVKVLMNLANDNPSGCELIASCGGLNTMA 681
D+ + + + + K LL DCLL +VKVLMNL N N GC +A+CGGL +MA
Sbjct: 588 SDRDHHVTEQPSLTYDIDKGCLCLLSDCLLTAVKVLMNLTNGNSVGCREVAACGGLESMA 647
Query: 682 SLIMKHFPSFCFVVDNNYNTRDVNLDHELSSSQNSKAHQVKIKQLRDHELDFLVAILGLL 741
L++ HFPSF TR L S S K K L D ELDFLVAILGLL
Sbjct: 648 ELVVGHFPSF---------TRS-----PLYSQMESGTCHQKDKHLTDQELDFLVAILGLL 693
Query: 742 VNLVEKDSLNRVRLSSARVPVDLSQNPQS-EETQRDVIALLCSVFLASQGASEA---SGT 797
VNLVEK+ +NR RL++A VP+ NP+ +++++D+I LLCS+FL ++G+++ + T
Sbjct: 694 VNLVEKNGINRSRLAAASVPI---TNPEGLQDSEQDMIPLLCSIFLTNKGSADTKDETST 750
Query: 798 ISPDDEESLMQGAREAEMMIVEAYAALLLAFLSTESMKVRGAISSCLPNNSLKILVPALE 857
+ DDEE++++ +EAE MIVEAY+ALLLAFLSTES +R AI LP + ILVP L+
Sbjct: 751 FTLDDEEAVLESEKEAEKMIVEAYSALLLAFLSTESRSIRNAIRDYLPKRDMAILVPVLD 810
Query: 858 KFVSFHLQLNMITEETHSAVTEVIEKCKL 886
+FV+FH L+MI ETH V EVIE CKL
Sbjct: 811 RFVAFHTTLDMIPPETHKVVMEVIESCKL 839
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,430,995
Number of extensions: 594476
Number of successful extensions: 1741
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1731
Number of HSP's successfully gapped: 4
Length of query: 887
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 780
Effective length of database: 8,173,057
Effective search space: 6374984460
Effective search space used: 6374984460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)