BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0495900 Os10g0495900|J100073O04
(118 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174 86 5e-18
AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176 82 5e-17
AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176 82 6e-17
AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181 73 3e-14
AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189 64 2e-11
AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202 55 9e-09
>AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174
Length = 173
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 10/81 (12%)
Query: 38 FLIAESCLLAGLVQSAYHTRYRKVFFENPPDCETVRRGTFGAGAAFSLITCVLTGAYY-F 96
FLIAE CLLAG V++AYHT+YR +F +NPPDC+T+R+G F AGA+F +++ YY F
Sbjct: 102 FLIAEICLLAGSVENAYHTKYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFF 161
Query: 97 YFSKSRVSYARREATIGMSPY 117
YFS + S +SPY
Sbjct: 162 YFSAAEAS---------LSPY 173
>AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176
Length = 175
Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 32 LLLRLTFLIAESCLLAGLVQSAYHTRYRKVF-FENPPDCETVRRGTFGAGAAFSLITCVL 90
L+ + FLIAE CLLAG +++AYHT YR+++ ENPP CE +R+G F AGA+F+L T ++
Sbjct: 96 LICWVFFLIAEVCLLAGSIRNAYHTTYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIV 155
Query: 91 TGAYYFYFSKSRVSY 105
+ YY +S++R Y
Sbjct: 156 SQFYYISYSRARDGY 170
>AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176
Length = 175
Score = 82.0 bits (201), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 32 LLLRLTFLIAESCLLAGLVQSAYHTRYRKVF-FENPPDCETVRRGTFGAGAAFSLITCVL 90
L+ + FLIAE CLLA +++AYHT+YRK++ E+PP CE +R+G F AGAAF+L T ++
Sbjct: 96 LICWVFFLIAEMCLLAASIRNAYHTQYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIV 155
Query: 91 TGAYYFYFSKSRVSY 105
+ YY +S++R +Y
Sbjct: 156 SQFYYVCYSRARDAY 170
>AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181
Length = 180
Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 38 FLIAESCLLAGLVQSAYHTRYRKVFFENPPDCETVRRGTFGAGAAFSLITCVLTGAYYFY 97
F IA+ CLLAG V++AYHT+YR F P C ++R+G FGAGAAF ++T +++ YY
Sbjct: 101 FFIAQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVT 160
Query: 98 FSKSRVSYARREATIGMS 115
S+++ R+ I MS
Sbjct: 161 LSRAKDFQPSRDPGIRMS 178
>AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189
Length = 188
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 8/88 (9%)
Query: 36 LTFLIAESCLLAGLVQSAYHTRYRKVFFENPPDCETVRRGTFGAGAAFSLITCVLTGAYY 95
+TFL+AE+C++AG ++AYHT+Y C ++R+G F AGA F + T VL YY
Sbjct: 104 MTFLVAEACVIAGATKNAYHTKYLS---SQTFSCASLRKGIFIAGAVFIVATMVLNVYYY 160
Query: 96 FYFSKSRVS-----YARREATIGMSPYS 118
YF+KS S R + IGM+ Y+
Sbjct: 161 MYFTKSVSSPPAHKANRSSSNIGMAGYA 188
>AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202
Length = 201
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 36 LTFLIAESCLLAGLVQSAYHTRYRKVFFENPPDCETVRRGTFGAGAAFSLITCVLTGAYY 95
++FL AE+CLL G ++AYHT+ ++ C + G F AGAAF+L++ + T YY
Sbjct: 102 VSFLGAEACLLGGSARNAYHTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYY 161
Query: 96 FYFSKSRVSYARREATIGMS 115
SK+ + G++
Sbjct: 162 LAHSKADTGGWEKHQNDGIN 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,327,622
Number of extensions: 81849
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 6
Length of query: 118
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 33
Effective length of database: 8,776,209
Effective search space: 289614897
Effective search space used: 289614897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)