BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0492000 Os10g0492000|AK064354
         (153 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06950.1  | chr1:2130303-2135563 REVERSE LENGTH=1017           202   6e-53

>AT1G06950.1 | chr1:2130303-2135563 REVERSE LENGTH=1017
          Length = 1016

 Score =  202 bits (514), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 126/146 (86%)

Query: 1   LDDVDAANMHMEIGRRIYRERLETRDRDADMEQRRAFQKLIYVSNLVFGDASTFLLPWKR 60
           +D+ DAA MHMEIGRRI+R+RLET +R+ D EQRRAF +L+YVS LVFGDAS+FLLPWKR
Sbjct: 225 IDEPDAAAMHMEIGRRIFRQRLETGEREGDAEQRRAFMRLVYVSALVFGDASSFLLPWKR 284

Query: 61  LFGVTDSQIDIAMRENAKILYASQLKSIGRGLDIGTLIEVRRAQLAYKLSDEIAAEMFKE 120
           +  VTD+Q++IA+RENAK LYA +LK +GR +++  L+++R++QL++KLSDE+A ++F+E
Sbjct: 285 VLKVTDAQVEIAIRENAKQLYAERLKLVGRDINVENLVDLRKSQLSFKLSDELAEDLFRE 344

Query: 121 HAKKLVQENISSALDIVKSRTKAANT 146
           H +K+V ENISSAL I+KSRT+AA +
Sbjct: 345 HTRKVVVENISSALSILKSRTRAAKS 370



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,600,053
Number of extensions: 90431
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)