BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0485100 Os10g0485100|AK063971
(855 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19780.1 | chr3:6870238-6874677 FORWARD LENGTH=1060 336 3e-92
AT1G33780.1 | chr1:12244799-12246034 REVERSE LENGTH=326 69 1e-11
AT3G29240.1 | chr3:11191780-11192868 FORWARD LENGTH=318 56 1e-07
>AT3G19780.1 | chr3:6870238-6874677 FORWARD LENGTH=1060
Length = 1059
Score = 336 bits (862), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/490 (40%), Positives = 272/490 (55%), Gaps = 44/490 (8%)
Query: 394 FAGSLFFSDGGYRLLQTLTGGSRMPSLVIIDPIQQKHYVFPDEIEFTYPSLANFLDHFMN 453
F GS FFSD Y LL+ LTG ++PS VIIDP Q+HYV D+ F+Y SL +FLD ++N
Sbjct: 584 FTGSFFFSDANYVLLRALTGDVKIPSAVIIDPALQQHYVLQDK--FSYSSLVDFLDGYLN 641
Query: 454 RSLSPYYRSALSVISSKELLRPPFINRDFHEADSIPQLTTSNFCMLVFGFEGCVSKSELP 513
SLSPY +S S+ + K PPF+N DFHE DSIP++T S F +V ++
Sbjct: 642 GSLSPYAQSESSIQTPKRAAVPPFVNLDFHEVDSIPRVTVSTFSHMVHAWDQ-------- 693
Query: 514 FSNTENISSAWKKDVLVLFSNSWCGFCQRTELVVREVYRSFKNF---LSSNSQFLQAQDL 570
S+ E +DVLV FSN+WCGFCQR ELV+ EVYRS K + + S+ Q +L
Sbjct: 694 -SSAEKAPCPLCQDVLVFFSNTWCGFCQRMELVLHEVYRSLKEYKAIIQGGSRNNQRSEL 752
Query: 571 QIEEKEEESTMKGFPAIYLIDCTSNECHHLLKSVGKEERYPTLLFFPAENKSAISYERGI 630
E +K P IYL+DCT N+C +LKS+ + E YP+L+ FPAE YE
Sbjct: 753 A-ETPTNGENLKS-PLIYLMDCTLNDCSLILKSINQREVYPSLILFPAERNKVTPYEGES 810
Query: 631 SVSNLFEFLESHASNSPHLLEYKGFLWKK-----------------KTVVQGDAPQAIQF 673
SV+++ EFL HA+NS L + V GD +
Sbjct: 811 SVTDITEFLARHANNSREFFRLLPTLSRNGRRNSNKVDQSSSSAVNNKVTDGDKLVEVVL 870
Query: 674 DNSD----KISND-VGSHSPS-HSERNEARVLTGSVLTATSKLGSAVPFDNSQVLIVSAD 727
N + ++++D V S SP HS N +V TG+VL AT KL +++ F S++LI+ A
Sbjct: 871 RNREPAEREVNHDQVNSQSPPIHSLTNAPQVKTGTVLVATEKLAASLTFAKSKILIIKAG 930
Query: 728 SREGFHGLIINKRLSWDTFKNLDGSMEPIKHAPLFYGGPVVVQGYYLVSLSR----VAFD 783
GF GLI NKR+ W +F +L + E +K PL +GGPVV G L++L+R
Sbjct: 931 PEIGFLGLIFNKRIRWKSFPDLGETAELLKETPLSFGGPVVDPGIPLLALTRERDSSTNH 990
Query: 784 GYLQVIPGVYYGNVAATAQVTRRIKSGEQSAENLWFFLGFSNWEYSQLFDELSEGAWQVS 843
+ ++ PGVY+ + + A+ + +KS E + WFFLG+S+W Y QLFDE+ G W V
Sbjct: 991 DHPEISPGVYFLDHQSVARRIQELKSRELNPSEYWFFLGYSSWSYEQLFDEIGLGVWDVD 1050
Query: 844 EEPIEHLVWP 853
I+ WP
Sbjct: 1051 NSDID-FAWP 1059
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 64/114 (56%), Gaps = 10/114 (8%)
Query: 58 KLMEIGEKMSVMVVNDGESISYRSDSQGSTDNPLYDILTKLIHKTRPAHRSKKTKISFVA 117
K ++ K+S M+++ G+ ++ + + G + L +IL L+H R K++K+S +A
Sbjct: 405 KKIKFENKVSFMIMDGGKHVALDTIAPGMEGSSLQEILKNLLH------RRKESKLSSIA 458
Query: 118 KDVAIKKLSDDSEVQVVESLSIRDSQLERNEGSCASSDGGNDDYTEDSVHENRA 171
KDV + LSDD ++V+++L + + + + +S++G +E S+H A
Sbjct: 459 KDVGFRLLSDDVHIKVLDALPSQAEVVSGQDTTSSSAEGS----SEISLHPTEA 508
>AT1G33780.1 | chr1:12244799-12246034 REVERSE LENGTH=326
Length = 325
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 8/151 (5%)
Query: 700 TGSVLTATSKLGSAVPFDNSQVLIVSADSR---EGFHGLIINKRLSWDTFKNLDGSMEPI 756
TG VL AT KL F + VL++ A +R EG G++IN+ L K++ + +
Sbjct: 138 TGCVLVATEKLDGYRTFARTVVLLLRAGTRHPQEGPFGVVINRPLH-KNIKHMKSTKTEL 196
Query: 757 K----HAPLFYGGPVVVQGYYLVSLSRVAFDGYLQVIPGVYYGNVAATAQVTRRIKSGEQ 812
L++GGP+ + L + + G+ +V+PG+ +G + + +K G
Sbjct: 197 ATTFSECSLYFGGPLEASMFLLKTGDKTKIPGFEEVMPGLNFGTRNSLDEAAVLVKKGVL 256
Query: 813 SAENLWFFLGFSNWEYSQLFDELSEGAWQVS 843
+ FF+G++ W+ QL +E+ W V+
Sbjct: 257 KPQEFRFFVGYAGWQLDQLREEIESDYWHVA 287
>AT3G29240.1 | chr3:11191780-11192868 FORWARD LENGTH=318
Length = 317
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 700 TGSVLTATSKLGSAVPFDNSQVLIVSADSREGFHGLIINK------RLSWDTFKNLDGSM 753
TG +L AT KL F+ + +L++S G G+I+N+ + + T ++ G+
Sbjct: 133 TGCLLIATEKLDGVHIFEKTVILLLSVGP-SGPIGVILNRPSLMSIKETKSTILDMAGTF 191
Query: 754 EPIKHAPLFYGGPVVVQGYYLVSL-----SRVAFDG-YLQVIPGVYYGNVAATAQVTRRI 807
+ LF+GGP+ +G +LVS + V G + QV+ G+YYG + +
Sbjct: 192 SDKR---LFFGGPLE-EGLFLVSPRSGGDNEVGKSGVFRQVMKGLYYGTRESVGLAAEMV 247
Query: 808 KSGEQSAENLWFFLGFSNWEYSQLFDELSEGAWQVS 843
K L FF G+ WE QL E+ G W V+
Sbjct: 248 KRNLVGRSELRFFDGYCGWEKEQLKAEILGGYWTVA 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,134,754
Number of extensions: 850680
Number of successful extensions: 2396
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2398
Number of HSP's successfully gapped: 4
Length of query: 855
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 748
Effective length of database: 8,173,057
Effective search space: 6113446636
Effective search space used: 6113446636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)