BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0481000 Os10g0481000|Os10g0481000
(174 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164 81 3e-16
AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163 79 2e-15
AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167 75 2e-14
AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149 73 8e-14
AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158 69 9e-13
AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202 67 7e-12
AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204 65 2e-11
AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184 64 5e-11
AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169 63 9e-11
AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244 59 9e-10
AT4G26950.1 | chr4:13533643-13534077 REVERSE LENGTH=145 54 3e-08
AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137 49 2e-06
AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141 48 2e-06
>AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164
Length = 163
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 92 LPVNIPDWSKILG----TDAARWPSXXXXXXXXXXXXXXWVPPHELLLCRERAAASFSVR 147
LPVN+PDWSKIL + R W+PPHE L + ASFSV
Sbjct: 79 LPVNVPDWSKILRGEYRDNRRRSIEDNDDDDDDNEDGGDWLPPHEFLA--KTRMASFSVH 136
Query: 148 EGAGRTLKGRDLRRVRNAIWEKTGFQD 174
EG GRTLKGRDL RVRNAI+EK GFQD
Sbjct: 137 EGVGRTLKGRDLSRVRNAIFEKFGFQD 163
>AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163
Length = 162
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 92 LPVNIPDWSKILGTDAARWPSXXXXXXXXXXXX-----XXWVPPHELLLCRERAAASFSV 146
LPVN+PDWSKILG ++ R VPPHELL R ASFSV
Sbjct: 77 LPVNVPDWSKILGDESRRQRKISNEEEVDGDEILCGEGTRRVPPHELLA--NRRMASFSV 134
Query: 147 REGAGRTLKGRDLRRVRNAIWEKTGFQD 174
EGAGRTLKGRDL RVRN I++ G +D
Sbjct: 135 HEGAGRTLKGRDLSRVRNTIFKIRGIED 162
>AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 92 LPVNIPDWSKILGTD-------AARWPSXXXXXXXXXXXXXXWVPPHELLLCRERAAASF 144
LPVNIPDWSKIL ++ +PPHE L R +SF
Sbjct: 79 LPVNIPDWSKILKSEYRGHAIPDDDSDDDDEDDDDSNDGGRRMIPPHEYLA--RRRGSSF 136
Query: 145 SVREGAGRTLKGRDLRRVRNAIWEKTGFQD 174
+V EG G T KGRDLRR+RNAIWEK GFQD
Sbjct: 137 TVHEGIGGTAKGRDLRRLRNAIWEKIGFQD 166
>AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149
Length = 148
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 92 LPVNIPDWSKILGTDAARWPSXXXXXXXXXXXXXXWVPPHELLLCRERAAASFSVREGAG 151
LP+N+ +WSKILG + + +PPHE L + ASFSV EG G
Sbjct: 74 LPMNVQNWSKILGKENRK------SIENDDDGGEGKLPPHEYLA--KTRMASFSVHEGIG 125
Query: 152 RTLKGRDLRRVRNAIWEKTGFQD 174
RTLKGRD+ RVRNAI EKTGF D
Sbjct: 126 RTLKGRDMSRVRNAILEKTGFLD 148
>AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158
Length = 157
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 93 PVNIPDWSKILGTDAARWPSXXXXXXXXXXXXXXWVPPHELLLCR--ERAAASFSVREGA 150
P+NIPDWSK+ G S VPPHEL+ R +SFS+ EG
Sbjct: 62 PMNIPDWSKVYGYSKKNTSSHLHSWAIDDDDEGSMVPPHELVAKRLARTQISSFSMCEGI 121
Query: 151 GRTLKGRDLRRVRNAIWEKTGF 172
GRTLKGRDL + RNA+ +TGF
Sbjct: 122 GRTLKGRDLSKTRNAVLTRTGF 143
>AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202
Length = 201
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 93 PVNIPDWSKILGTDAARWPSXXXXXXXXXXXXXXWVPPHELLLCRE-----RAAASFSVR 147
PVN+PDWSKI ++ S +PPHE L + ++ SV
Sbjct: 117 PVNVPDWSKIYRVNSV--ESIHESDEEEEEDSGMMMPPHEYLAKSQQRRSRKSGGGGSVF 174
Query: 148 EGAGRTLKGRDLRRVRNAIWEKTGF 172
EG GRTLKGR+LRRVR+AIW +TGF
Sbjct: 175 EGVGRTLKGRELRRVRDAIWSQTGF 199
>AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204
Length = 203
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 93 PVNIPDWSKILGTDAARWPSXXXXXXXXXXXXXXWVPPHELLL------CRERAAASFSV 146
PVN+PDWSKI D+ +PPHE L R+ SV
Sbjct: 117 PVNVPDWSKIYRVDSVE-SIHELDDEDDEDEESGMMPPHEYLAKSQARRSRKIGGGGASV 175
Query: 147 REGAGRTLKGRDLRRVRNAIWEKTGF 172
+G GRTLKGR+LRRVR+AIW +TGF
Sbjct: 176 FDGVGRTLKGRELRRVRDAIWSQTGF 201
>AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184
Length = 183
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 93 PVNIPDWSKILGTDAAR-WPSXXXXXXXXXXXXXXW----VPPHELLLCRERAA-ASFSV 146
PV +PDWSKIL ++ + + W VPPHE + R R SV
Sbjct: 96 PVKVPDWSKILKVESVKSMHNNNNDNDNADVADCDWESAMVPPHEYVAARSRNGDGGSSV 155
Query: 147 REGAGRTLKGRDLRRVRNAIWEKTGF 172
G GRTLKGRD+RRVR+A+W +TGF
Sbjct: 156 FLGVGRTLKGRDMRRVRDAVWSQTGF 181
>AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169
Length = 168
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 93 PVNIPDWSKILGTDAARWPSXXXXXXXXXXXXXX----WVPPHELL---LCRERAAASFS 145
P+N+PDWSK+ G + S VPPHE + L R + + SFS
Sbjct: 81 PMNVPDWSKVYGDSKSNRRSSHLHSHAADDDDEDDDGCMVPPHEWVARKLARTQIS-SFS 139
Query: 146 VREGAGRTLKGRDLRRVRNAIWEKTGF 172
+ EG GRTLKGRDL +VRNA+ KTGF
Sbjct: 140 MCEGVGRTLKGRDLSKVRNAVLSKTGF 166
>AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244
Length = 243
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 4/51 (7%)
Query: 127 WVPPHELLLCRERAAASF---SVREGAGRTLKGRDLRRVRNAIWEKTGFQD 174
+PPHE++ R A +S SV EGAGRTLKGRDLR+VRNA++ +TGF D
Sbjct: 194 MLPPHEIV-ARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243
>AT4G26950.1 | chr4:13533643-13534077 REVERSE LENGTH=145
Length = 144
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 92 LPVNIPDWSKILGTDAARWPSXXXXXXXXXXXXXXWVPPHELLLCRERAAASFSVREGAG 151
+PVN+PDWS + + V P E L R R+++S SV EG G
Sbjct: 74 VPVNVPDWSMVQRKKTKKVVDDEN------------VSPEEYFLRRSRSSSSSSVMEGVG 121
Query: 152 RTLKGRDLRRVRNAIWEKTGF 172
R LKGRDL +VRNAI ++TGF
Sbjct: 122 RKLKGRDLSKVRNAILKQTGF 142
>AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137
Length = 136
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 127 WVPPHELLLCR-ERAAASFSVREGAGRTLKGRDLRRVRNAIWEKTGF 172
+PPH ++ R + +FSV G+GRTLKGRDL RVRN++ TGF
Sbjct: 87 MIPPHIMIGRRIQGGQMAFSVCSGSGRTLKGRDLSRVRNSVLRLTGF 133
>AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141
Length = 140
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 127 WVPPHELLLCR-ERAAASFSVREGAGRTLKGRDLRRVRNAIWEKTGF 172
+PPH ++ R E +FSV G GRTLKGRDL RVRN++ + TGF
Sbjct: 91 MIPPHLIVGRRMEGGQMAFSVCTGNGRTLKGRDLSRVRNSVLKLTGF 137
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,941,023
Number of extensions: 79985
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 13
Length of query: 174
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 82
Effective length of database: 8,584,297
Effective search space: 703912354
Effective search space used: 703912354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)