BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0479800 Os10g0479800|AK107572
(120 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28320.1 | chr2:12095161-12099424 FORWARD LENGTH=738 224 8e-60
AT3G54800.1 | chr3:20286378-20289880 FORWARD LENGTH=734 201 6e-53
AT5G45560.1 | chr5:18465561-18470752 FORWARD LENGTH=720 158 7e-40
AT4G19040.2 | chr4:10431799-10437171 REVERSE LENGTH=725 153 2e-38
AT5G35180.4 | chr5:13424538-13432787 FORWARD LENGTH=812 140 2e-34
AT5G10750.1 | chr5:3399072-3399980 FORWARD LENGTH=303 132 5e-32
AT1G06050.1 | chr1:1830726-1831667 REVERSE LENGTH=314 122 3e-29
AT5G25010.1 | chr5:8616009-8616869 FORWARD LENGTH=287 109 4e-25
AT5G24990.1 | chr5:8610591-8611475 FORWARD LENGTH=295 108 8e-25
AT5G25020.1 | chr5:8618567-8619465 FORWARD LENGTH=270 94 2e-20
AT1G59650.1 | chr1:21920099-21922670 FORWARD LENGTH=493 48 1e-06
>AT2G28320.1 | chr2:12095161-12099424 FORWARD LENGTH=738
Length = 737
Score = 224 bits (571), Expect = 8e-60, Method: Composition-based stats.
Identities = 103/115 (89%), Positives = 111/115 (96%)
Query: 3 FVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFRGSNYLELGVDIGS 62
FVNGDDA+RNSRFKLIPYISKGSWIVKQSVGKKACL+GQALEINYFRG NY+ELGVDIGS
Sbjct: 621 FVNGDDAYRNSRFKLIPYISKGSWIVKQSVGKKACLIGQALEINYFRGKNYIELGVDIGS 680
Query: 63 STVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSI 117
STVARGVVSLVLGYLN LVIEMAFL+Q NT+EELPE+LLGTCR N+LDASKA+SI
Sbjct: 681 STVARGVVSLVLGYLNKLVIEMAFLIQANTEEELPEYLLGTCRFNHLDASKAISI 735
>AT3G54800.1 | chr3:20286378-20289880 FORWARD LENGTH=734
Length = 733
Score = 201 bits (512), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 96/115 (83%), Positives = 104/115 (90%)
Query: 1 ERFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFRGSNYLELGVDI 60
E FVNGDDA+RNSRFKLIP+ISKGSWIVKQSVGKKACLVGQ LE+ Y RG NYLEL +D+
Sbjct: 616 ESFVNGDDAYRNSRFKLIPHISKGSWIVKQSVGKKACLVGQVLEVCYTRGKNYLELDIDV 675
Query: 61 GSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAV 115
GSSTVARGV +LVLGYLNNLVIEMAFL+Q NT EELPE LLGTCRLNYLD SK+V
Sbjct: 676 GSSTVARGVTNLVLGYLNNLVIEMAFLIQANTVEELPELLLGTCRLNYLDVSKSV 730
>AT5G45560.1 | chr5:18465561-18470752 FORWARD LENGTH=720
Length = 719
Score = 158 bits (399), Expect = 7e-40, Method: Composition-based stats.
Identities = 71/115 (61%), Positives = 92/115 (80%)
Query: 1 ERFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFRGSNYLELGVDI 60
+RFV+GDD FRNSR KLIP + KGSWIV+QSVG CL+G+A++ NY RG YLE+ VDI
Sbjct: 598 QRFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLEIDVDI 657
Query: 61 GSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAV 115
GSSTVA GV+ LV+G + +LV+EMAFLVQ NT EELPE L+G R+++++ S A+
Sbjct: 658 GSSTVANGVLGLVIGVITSLVVEMAFLVQANTPEELPERLIGAVRVSHVELSSAI 712
>AT4G19040.2 | chr4:10431799-10437171 REVERSE LENGTH=725
Length = 724
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 91/115 (79%)
Query: 1 ERFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFRGSNYLELGVDI 60
+RFV+GDD FRNSR KLIP + KGSWIV+QSVG CL+G+A++ NY RG YLE+ VDI
Sbjct: 603 QRFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLEIDVDI 662
Query: 61 GSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAV 115
GSSTVA GV+ LV+G + +LV+EMAFLVQ NT EE PE L+G R+++++ S A+
Sbjct: 663 GSSTVANGVLGLVIGVITSLVVEMAFLVQANTAEEQPERLIGAVRVSHIELSSAI 717
>AT5G35180.4 | chr5:13424538-13432787 FORWARD LENGTH=812
Length = 811
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 92/118 (77%)
Query: 2 RFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFRGSNYLELGVDIG 61
+FV+G D++R++RFKLIP I +G W+VK++VG KACL+G+A+ Y R N+LE+ VDIG
Sbjct: 694 KFVDGSDSYRDARFKLIPSIVQGYWMVKRAVGTKACLLGKAVTCKYLRQDNFLEIDVDIG 753
Query: 62 SSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSIDE 119
SS VAR V+ LVLGY+ +L++++A L++G + +LPE++LGT RLN ++ AVS +E
Sbjct: 754 SSAVARSVIGLVLGYVTSLIVDLAILIEGKEESDLPEYILGTVRLNRIELDSAVSFEE 811
>AT5G10750.1 | chr5:3399072-3399980 FORWARD LENGTH=303
Length = 302
Score = 132 bits (331), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 1 ERFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGK-KACLVGQALEINYFRGSNYLELGVD 59
RF+NGDDAFRN RFK++ I KG W+VK +VG ACL+G+AL NY RG NY E+ VD
Sbjct: 157 HRFINGDDAFRNQRFKIVNRIVKGPWVVKAAVGNYSACLLGKALTCNYHRGPNYFEIDVD 216
Query: 60 IGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSID 118
I SS +A ++ L LGY+ ++ I+M FL + T+EELPE L+G R+ ++ S A +D
Sbjct: 217 ISSSAIATAILRLALGYVTSVTIDMGFLAEAQTEEELPERLIGAVRVCQMEMSSAFVVD 275
>AT1G06050.1 | chr1:1830726-1831667 REVERSE LENGTH=314
Length = 313
Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 1 ERFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKA-CLVGQALEINYFRGSNYLELGVD 59
+RF+ GDD F+ SR KLI I KG WIV+++VG++A C++G+AL Y G N++E+ VD
Sbjct: 139 DRFLKGDDGFKKSRLKLIANIVKGPWIVRKAVGEQAICVIGRALSCKYVSGENFVEIDVD 198
Query: 60 IGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSID 118
IGSS VA +V L GY+ L +++AFL++ T+ ELPE LLG R + L A SI+
Sbjct: 199 IGSSMVASAIVHLAFGYVTTLTVDLAFLIESQTEAELPEKLLGAVRFSELQTESATSIE 257
>AT5G25010.1 | chr5:8616009-8616869 FORWARD LENGTH=287
Length = 286
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Query: 1 ERFVN-GDDAFRNSRFKLIPYISKGSWIVKQSVGK-KACLVGQALEINYFRGSNYLELGV 58
+F+N DD+FRN RFK++ + KG W+VK + GK A L G+ ++ +Y+RG+NY E+ V
Sbjct: 150 HKFINIDDDSFRNERFKVVTNVVKGPWVVKATAGKLGAFLAGKVVKCSYYRGANYFEVDV 209
Query: 59 DIGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSID 118
D S + +V L LGY+ NLV ++ F+V+ T+EELPE L+G R+ Y++ S A +D
Sbjct: 210 DFSISAIYSALVRLTLGYVTNLVADVGFVVEAQTEEELPERLIGGGRVCYMELSSAFLVD 269
Query: 119 E 119
+
Sbjct: 270 D 270
>AT5G24990.1 | chr5:8610591-8611475 FORWARD LENGTH=295
Length = 294
Score = 108 bits (269), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 1 ERFVNGD-DAFRNSRFKLIPYISKGSWIVKQSVGKKACLV-GQALEINYFRGSNYLELGV 58
+F+N D D+FRN RFK++ + KG W+VK + GK V G+A++ Y+RG NY E+ V
Sbjct: 151 HKFINTDEDSFRNERFKIVSNVVKGPWVVKAAAGKFGAFVAGKAMKCTYYRGDNYFEVDV 210
Query: 59 DIGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSID 118
DI SS + ++ +LGY+ L++++ F+V+ T EELPE L+G R+ +++ S + +D
Sbjct: 211 DISSSAIMTALIRFMLGYVTYLMVDIGFVVEAQTAEELPERLIGGARICHMELSSSFLVD 270
Query: 119 E 119
+
Sbjct: 271 D 271
>AT5G25020.1 | chr5:8618567-8619465 FORWARD LENGTH=270
Length = 269
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 12 NSRFKLIPYISKGSWIVKQSVGK-KACLVGQALEINYFRGSNYLELGVDIGSSTVARGVV 70
N RFK++ + KG W+VK + GK A + G+A++ +Y RG NY E+ VDI SS + ++
Sbjct: 134 NLRFKIVSNVVKGPWVVKAAAGKFGAFVAGKAMKCSYHRGDNYFEVDVDISSSAIMTALI 193
Query: 71 SLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSI 117
+LGY+ L++++ F+V+ T+EELPE L+G R+ +++ S A I
Sbjct: 194 RFMLGYVTYLMVDIGFVVEAQTEEELPERLIGGARICHMELSSAFVI 240
>AT1G59650.1 | chr1:21920099-21922670 FORWARD LENGTH=493
Length = 492
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 47 YFRGSNYLELGVDIGS-STVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCR 105
++ G NY E+ +D+ S ++R L L N V+++ +QGN EELPE +L R
Sbjct: 414 FYSGENYFEIDIDMHRFSYISRKGFEAFLDRLKNCVLDVGLTIQGNKPEELPEQILCCIR 473
Query: 106 LNYLD 110
LN +D
Sbjct: 474 LNGID 478
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,547,449
Number of extensions: 93199
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 11
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)