BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0478000 Os10g0478000|J100055D15
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G31160.1 | chr2:13277903-13278562 FORWARD LENGTH=220 207 3e-54
AT1G07090.1 | chr1:2174202-2174792 REVERSE LENGTH=197 200 3e-52
AT3G23290.2 | chr3:8326958-8328010 FORWARD LENGTH=196 197 3e-51
AT5G28490.1 | chr5:10454541-10455113 REVERSE LENGTH=191 194 2e-50
AT3G04510.1 | chr3:1215812-1216417 REVERSE LENGTH=202 191 3e-49
AT5G58500.1 | chr5:23645535-23646083 REVERSE LENGTH=183 187 5e-48
AT2G42610.1 | chr2:17748005-17748538 FORWARD LENGTH=178 176 7e-45
AT1G78815.1 | chr1:29632054-29632641 REVERSE LENGTH=196 161 2e-40
AT4G18610.1 | chr4:10250794-10251369 FORWARD LENGTH=192 150 4e-37
AT1G16910.1 | chr1:5785373-5785867 FORWARD LENGTH=165 147 3e-36
>AT2G31160.1 | chr2:13277903-13278562 FORWARD LENGTH=220
Length = 219
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/131 (76%), Positives = 109/131 (83%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYE+QKRRDWNTFGQYLRNHRPPLSL+RCSGAHVLEFLRYLDQFGKTKV
Sbjct: 54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAA+EENGG+PE NPFGARAVRLYLREVR+ Q++AR
Sbjct: 114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173
Query: 160 GVSYEKKKRKK 170
GVSYEKKKRK+
Sbjct: 174 GVSYEKKKRKR 184
>AT1G07090.1 | chr1:2174202-2174792 REVERSE LENGTH=197
Length = 196
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 93/131 (70%), Positives = 107/131 (81%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTF QYL+NH+PPL+L+RCSGAHV+EFL+YLDQFGKTKV
Sbjct: 31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
L+QAWGSLDAL+GRLRAAYEENGGRP++NPF ARAVR+YLREVRE QA+AR
Sbjct: 91 QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150
Query: 160 GVSYEKKKRKK 170
G+ YEKKKRK+
Sbjct: 151 GIPYEKKKRKR 161
>AT3G23290.2 | chr3:8326958-8328010 FORWARD LENGTH=196
Length = 195
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 102/125 (81%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYE+QKRRDWNTFGQYLRNHRPPLSL+RCSGAHVLEFLRYLDQFGKTKV
Sbjct: 48 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREVR+ QA+AR
Sbjct: 108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167
Query: 160 GVSYE 164
G+SYE
Sbjct: 168 GISYE 172
>AT5G28490.1 | chr5:10454541-10455113 REVERSE LENGTH=191
Length = 190
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/130 (73%), Positives = 104/130 (80%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYE+QKRRDWNTF QYLRNHRPPLSL CSGAHVLEFLRYLDQFGKTKV
Sbjct: 25 RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAAYEENGG PE NPFG+RAVRL+LREVR+ QA+AR
Sbjct: 85 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144
Query: 160 GVSYEKKKRK 169
GVSYEKK+++
Sbjct: 145 GVSYEKKRKR 154
>AT3G04510.1 | chr3:1215812-1216417 REVERSE LENGTH=202
Length = 201
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/130 (69%), Positives = 104/130 (80%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYE+QKRRDWNTF QYLRNH PPLSLA CSGAHVL+FLRYLDQFGKTKV
Sbjct: 33 RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAAYEENGG PE +PFG+R+VR++LREVR+ QA++R
Sbjct: 93 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152
Query: 160 GVSYEKKKRK 169
GVSYEKK+++
Sbjct: 153 GVSYEKKRKR 162
>AT5G58500.1 | chr5:23645535-23646083 REVERSE LENGTH=183
Length = 182
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/132 (67%), Positives = 105/132 (79%), Gaps = 1/132 (0%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTF QYLRNH+PPL+L+RCSGAHVLEFL+YLDQFGKTKV
Sbjct: 19 RYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQP 78
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEE-NGGRPENNPFGARAVRLYLREVREHQARA 158
L+QAWGSLDAL+GRLRAA+EE GG PE+NPF A+AVR+YL+EVR+ QA+A
Sbjct: 79 NPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKA 138
Query: 159 RGVSYEKKKRKK 170
RG+ Y+KKKRK+
Sbjct: 139 RGIPYDKKKRKR 150
>AT2G42610.1 | chr2:17748005-17748538 FORWARD LENGTH=178
Length = 177
Score = 176 bits (446), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 93/124 (75%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTFGQYL+N RPP+ ++ CS HVL+FLRYLDQFGKTKV
Sbjct: 25 RYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQP 84
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
LRQAWGSLDAL+GRLRAAYEENGG PE NPF + A+R+YLREVRE QA+AR
Sbjct: 85 EPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKAR 144
Query: 160 GVSY 163
G+ Y
Sbjct: 145 GIPY 148
>AT1G78815.1 | chr1:29632054-29632641 REVERSE LENGTH=196
Length = 195
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 90/124 (72%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTF QYLRN +PP+ +++C H+L+FL+YLDQFGKTKV
Sbjct: 40 RYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQV 99
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
L+QAWGSLDAL+GRLRAA+EENGG PE NPF +R++LREVR+ QA+AR
Sbjct: 100 EPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKAR 159
Query: 160 GVSY 163
GV Y
Sbjct: 160 GVPY 163
>AT4G18610.1 | chr4:10250794-10251369 FORWARD LENGTH=192
Length = 191
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQKRRDWNTF QYL++ PPL +++ HVL FLRYLDQFGKTKV
Sbjct: 37 RYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQP 96
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEEN-GGRPENNPFGARAVRLYLREVREHQARA 158
L+QAWGSLDAL+GRLRAAYEE+ GG P+ NPF ++R++LREVRE QA+A
Sbjct: 97 DPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAKA 156
Query: 159 RGVSY 163
RG+ Y
Sbjct: 157 RGIPY 161
>AT1G16910.1 | chr1:5785373-5785867 FORWARD LENGTH=165
Length = 164
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 85/129 (65%)
Query: 40 RYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVXXXXXXXXXXX 99
RYESQK RDWNTF QYL PP+ + C H+L+FL+ DQFGKTKV
Sbjct: 23 RYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCVFFGQK 82
Query: 100 XXXXXXXXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARAR 159
L+QAWGSLDAL+GRLRAAYEENGG E NPF +R++LREVR QA+AR
Sbjct: 83 EPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGSQAKAR 142
Query: 160 GVSYEKKKR 168
GV Y+KKKR
Sbjct: 143 GVLYKKKKR 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,684,714
Number of extensions: 81189
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 10
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)