BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0477000 Os10g0477000|AK106419
(1166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04490.1 | chr3:1200816-1209713 FORWARD LENGTH=1119 1036 0.0
AT4G38092.1 | chr4:17885340-17886688 FORWARD LENGTH=131 105 1e-22
AT5G06120.1 | chr5:1844797-1852601 FORWARD LENGTH=1067 65 3e-10
>AT3G04490.1 | chr3:1200816-1209713 FORWARD LENGTH=1119
Length = 1118
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/1164 (48%), Positives = 748/1164 (64%), Gaps = 65/1164 (5%)
Query: 8 APDPQQLQSTMLAIEQACSLIQMHMSPADAEKVISSLHSSPMPYQACRFILETSHMPNAR 67
A D QLQSTM AIE ACS IQ++ +P AE I SLH SP PY+ACR+ILE S + NAR
Sbjct: 15 AEDLAQLQSTMRAIELACSYIQINSNPVAAEATILSLHQSPQPYKACRYILENSQVANAR 74
Query: 68 FQAAGAIGDAAIREWGILSDDNKKSLIVYCLNYVMEHASSPEGYVQAKVSAVAARLLKRG 127
FQAA AI ++AIREW L+ D+K LI +CL YVM+HA+S EGYV +KVS+VAA+L+KRG
Sbjct: 75 FQAAAAIRESAIREWSFLATDDKGGLISFCLGYVMQHANSSEGYVLSKVSSVAAQLMKRG 134
Query: 128 WVEFSDQEKAAIFFEIEQCVRGIHGPNRQFATINFLEALVSEFSPGTASAMCLPKEFHEQ 187
W+EF+ +K F++I Q + G HG + QF +NFLE+LVSEFSP T+SAM LP+EFHE
Sbjct: 135 WLEFTPAQKEVFFYQINQAILGSHGLDVQFIGVNFLESLVSEFSPSTSSAMGLPREFHEN 194
Query: 188 CQWSLEVKFLKDFYCWAQAAVFNSADRILNVNASVAEEKACSAAFRLMFQILSWSFKHNV 247
C+ SLE FLK FY WAQ A + +I+ ++SV E K C+A RLM QIL+W F ++
Sbjct: 195 CRKSLEQNFLKSFYQWAQDAALSVTSKIIESHSSVPEVKVCNATLRLMHQILNWEFPYS- 253
Query: 248 EHANSEAKIN---SGLRSDAINLKKFERSLVKPGSVWSDVLISSGHVQWVLNFYTAARQK 304
+ A IN G+R D +K E +V+PG+ W DVL+SS HV W++NFY++ RQK
Sbjct: 254 -KGGTRASINVFSDGIRPDNALSRKTECVIVQPGASWCDVLLSSSHVGWLINFYSSVRQK 312
Query: 305 FSYDTLWVDSPIATSCRQLIVQLCSLTGSVFPNDNADGQIQYLVRILSAVVHWIEPPDVI 364
F + W+D P+A S R+LIVQLCSL G +FP++N + Q+L+ +L+ V+ WI+PPDVI
Sbjct: 313 FDLEGYWLDCPVAVSARKLIVQLCSLAGEIFPSNNVQMRDQHLLLLLTGVLPWIDPPDVI 372
Query: 365 AASIRSGASESEFVDGCHALLSMASLTTCSLFDNLLKSTRNYGTINLLSALTSEAVKSFL 424
+ I G S SE +DGC ALLS+ ++TT +FD LL+S R +GT+ LLS L E VK +
Sbjct: 373 SKEIEEGRSGSEMIDGCRALLSIGTVTTPVVFDQLLRSLRPFGTLTLLSMLMGEVVKVLM 432
Query: 425 DNQNEEETWGSESLDILLETWNVILGDVDSEKSP--MSVDGAIAASSLFKIIVESHLKAA 482
N +EETW E+ DILL+TW +L +D + +G AA+SLF +IVES LK A
Sbjct: 433 ANSTDEETWSYEARDILLDTWTTLLTSMDGSGGNAWLPPEGIHAAASLFSLIVESELKVA 492
Query: 483 ADSAFEDTDDAEYFHVSVSKRDEQLALYAQIARSAADTTIPFLAQLFSERFARLSQRNGE 542
+ SA + DDA+ SVS DE+L YA IAR+A D TIPFLA+LFS+ ARL Q G
Sbjct: 493 SASATTE-DDADCL-ASVSAMDERLGSYALIARAAVDATIPFLAKLFSDHVARLHQGRGT 550
Query: 543 NDPTQTLEELYWLLLITSHVLTDSGEGETLLIPEALQVGFPYVVEVAQHPVVALSWSIIN 602
DPT+TLEE+Y LLLI HVL D GEGET L+P+ALQ F VVE HPVV LS SII
Sbjct: 551 VDPTETLEEVYSLLLIIGHVLADEGEGETALVPDALQSHFVDVVEANNHPVVVLSSSIIK 610
Query: 603 FSRQCLDPGIRARYFSPRLMEAVIWFLARWVATYLVPLDVSRGQVNRAEIDSVDKHMLQH 662
F+ QCLD +R+ FSPRLMEAVIWFLARW TYL L V + ++ S+
Sbjct: 611 FAEQCLDAEMRSSIFSPRLMEAVIWFLARWSFTYL--LLVEECNLGSNKLQSLP------ 662
Query: 663 SRKMLNSFAWENNQGERVLDFVVLISMVALTTYQGEIELQTLTCQKLLATVVRRKHTCTY 722
SR L ++ E+NQG+ VLD +V IS+ +LT+Y GE +LQ LTC +LL +VRR++ C +
Sbjct: 663 SRACLFTYFNEHNQGKFVLDIIVRISLTSLTSYPGEKDLQELTCFQLLHALVRRRNICFH 722
Query: 723 VVQLDSWRDLTRAFASGRSLFSLTGRLQRSLAETLACAASCIKDPEASVQYLRDLMGPVA 782
++ LDSWR+L AFA+ ++LF L QRSLA+TL +A ++ +AS QY++DLM +
Sbjct: 723 LLSLDSWRNLANAFANDKTLFLLNSVSQRSLAQTLVLSAYGMRSSDASNQYVKDLMAHMT 782
Query: 783 GCLVENANRSDLKSVAQQADVVYMVCCLLERLRGAARATQPRTQKVLFEMGHTVMNSLLT 842
LV+ +N SDLK++AQQ D++ +V C+LERLRGAA AT+PRTQ+ ++EMG +VMN +L
Sbjct: 783 SSLVDLSNSSDLKNLAQQPDIIMLVSCVLERLRGAASATEPRTQRAIYEMGLSVMNPVL- 841
Query: 843 LLEVYKNQSAVIYMILKFVVDFVDGQAVFLDAKETSVLVSFCLKLLQIYSSHNIGKVMXX 902
+LL++Y ++
Sbjct: 842 -------------------------------------------RLLEVYKH----EISLS 854
Query: 903 XXXXXXXXXQAEKYKDLRALLRLLTNICSKDLVGFLSDSSIEGSQDIAEVIYVGVDIVTP 962
+ EKYKDLRALL+LL+++CSKD+V F SDS S +I++V+Y G+ I+TP
Sbjct: 855 LSSTLLNEAKTEKYKDLRALLQLLSHLCSKDMVDFSSDSIETQSTNISQVVYFGLHIITP 914
Query: 963 LISLDLLKYPKLSRDYFALISHLLEVYPEKVANLNKVAFARIIGSLEFGLRNQDCDIVDR 1022
LI+L+LLKYPKL DYF+LISH+LEVYPE +A LN AF+ ++ +++FGL QD DIV
Sbjct: 915 LITLELLKYPKLCFDYFSLISHMLEVYPETLAQLNNDAFSHVLTTVDFGLHQQDVDIVTM 974
Query: 1023 CLTAINALASYHFKEXXXXXXXXXXQLMESEGSNGKLQESISSHFXXXXXXXXXFEDFRM 1082
CL A+ ALASYH+KE NG E I S F FED+
Sbjct: 975 CLRALKALASYHYKEKNAGNSGLGSHAAGHTDPNGVFHEGILSRFLRTLLHFLLFEDYST 1034
Query: 1083 ELAGSAADALLPLILCEQPLYQRLLQELVEKQQNPTVKSRLGMAFHXXXXXXXXXXXXDR 1142
+L +AADAL PLILCE LYQ L EL+EKQ NP K+RL A DR
Sbjct: 1035 DLVSTAADALFPLILCEPNLYQGLGNELIEKQANPNFKTRLANALQVLTTSNQLSSSLDR 1094
Query: 1143 PNRQRFRKNLRTFLGDVSGFMQIK 1166
N QRFRKNL FL +V GF++ +
Sbjct: 1095 LNYQRFRKNLNNFLVEVRGFLKTR 1118
>AT4G38092.1 | chr4:17885340-17886688 FORWARD LENGTH=131
Length = 130
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 78/107 (72%)
Query: 17 TMLAIEQACSLIQMHMSPADAEKVISSLHSSPMPYQACRFILETSHMPNARFQAAGAIGD 76
T ++ + S +Q++ +P AE I SLH SP PY+ACR+ILE S + NARFQAA AI
Sbjct: 23 TSCVLDISLSFVQINSNPVAAEATILSLHQSPQPYKACRYILENSQVANARFQAAAAIRK 82
Query: 77 AAIREWGILSDDNKKSLIVYCLNYVMEHASSPEGYVQAKVSAVAARL 123
+AIREW L+ D+K LI +CL YVM+HA+S EGYV +KVS+VAA+L
Sbjct: 83 SAIREWSFLATDDKGGLISFCLGYVMQHANSSEGYVLSKVSSVAAQL 129
>AT5G06120.1 | chr5:1844797-1852601 FORWARD LENGTH=1067
Length = 1066
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 24/245 (9%)
Query: 803 VVYMVCCLLERLRGAARATQPR-TQKVLFEMGHTV-MNSLLTLLEVYKNQSAVIYMILKF 860
V + + L+ LRG A AT R + LF+ + M LL + + + V +LKF
Sbjct: 708 VKFALIGLMRDLRGIAMATSSRRSYGFLFDWLYPAHMPLLLRGVSHWFDTPEVTTPLLKF 767
Query: 861 VVDFVDG--QAVFLDAKETSVLVSF--CLKLLQIYSSH-----NIGKVMXXXXXXXXXXX 911
+ +FV Q + D+ + ++ F KL+ Y S N+ +
Sbjct: 768 MAEFVHNKTQRLTFDSSSPNGILLFREVSKLIVAYGSRILALPNVADIY----------- 816
Query: 912 QAEKYKDLRALLRLLTNICSKDLVGFLSDSSIEGSQDIAEVIYVGVDIVTPLISLDLLKY 971
A KYK + L +L+ S + F + G + +A+ + + + + + D+L Y
Sbjct: 817 -AFKYKGIWVSLTILSRALSGNYCNF-GVFELYGDRALADALDIALKMTLAIPLADILAY 874
Query: 972 PKLSRDYFALISHLLEVYPEKVANLNKVAFARIIGSLEFGLRNQDCDIVDRCLTAINALA 1031
KL++ YF + L + + L+ F ++GSLE GL+ D I +C A++ LA
Sbjct: 875 RKLTKAYFGFVEVLCASHITFILKLDTATFMHLVGSLESGLKGLDTSISSQCAIAVDNLA 934
Query: 1032 SYHFK 1036
SY+F
Sbjct: 935 SYYFN 939
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 22,709,964
Number of extensions: 864637
Number of successful extensions: 2015
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2010
Number of HSP's successfully gapped: 4
Length of query: 1166
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1056
Effective length of database: 8,090,809
Effective search space: 8543894304
Effective search space used: 8543894304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 117 (49.7 bits)