BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0472400 Os10g0472400|AK121929
         (319 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07090.1  | chr3:2243153-2244476 REVERSE LENGTH=266            238   2e-63

>AT3G07090.1 | chr3:2243153-2244476 REVERSE LENGTH=266
          Length = 265

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/279 (43%), Positives = 166/279 (59%), Gaps = 22/279 (7%)

Query: 29  MADDDYPVKLHIYDLSQGMARQLSTTILGKAIEAIWHTGVVVYGKEYFFGGGIQKDHPGR 88
           MA++ + V L++YDLSQG+ARQLS ++LGK IE +WHTG+VVYG EYFFGGGIQ    GR
Sbjct: 1   MAEEAHKVTLNVYDLSQGLARQLSQSLLGKVIEGVWHTGIVVYGNEYFFGGGIQHLPVGR 60

Query: 89  TPYGTPVRVEDLGVTHVPREIFEDFLQDINPRYTPAXXXXXXXXXXXXXXEAAQFLVGSA 148
           TPYGTP+R  +LG++HVP+++FE +L++I+PRYT                E AQFLVG  
Sbjct: 61  TPYGTPIRTIELGLSHVPKDVFEMYLEEISPRYTAESYNLLTHNCNNFSNEVAQFLVGKG 120

Query: 149 IPSYILELPNEVMNSPIGALILPMIQGLETSLRAGVAPQPPQFK--PSPVAAVTATQSPP 206
           IP YIL+LPN+V+NSP+G LI+PM+QGLET+L+AG  PQ PQF+  P P  A +    P 
Sbjct: 121 IPDYILQLPNDVLNSPMGGLIMPMLQGLETTLKAGAVPQVPQFRPQPQPFGAFSKDDGP- 179

Query: 207 SGSIHVEPKSTASDKTEVDNNGGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPLREA 266
              I + PK  A++ +                                      DPL +A
Sbjct: 180 --QIVIAPKLEAAETSTATEK-----------------VPPVIQPSASKEKVKDDPLGDA 220

Query: 267 KSRVQEEIKREFAAIMXXXXXXXXXXXXXXXRRVMERHG 305
           ++++QEEI  EFAA+M               +RVM+++G
Sbjct: 221 RAKIQEEITSEFAALMAQGTLRASEAAAMATKRVMQKYG 259



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,661,530
Number of extensions: 216277
Number of successful extensions: 964
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,392,385
Effective search space: 1846324700
Effective search space used: 1846324700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)