BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0471000 Os10g0471000|AK070210
(148 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33420.1 | chr2:14158782-14162304 FORWARD LENGTH=1040 149 4e-37
AT1G04470.1 | chr1:1211177-1214591 REVERSE LENGTH=1036 143 4e-35
AT2G25800.1 | chr2:11006138-11009728 REVERSE LENGTH=988 105 1e-23
AT2G20010.2 | chr2:8637977-8641184 REVERSE LENGTH=953 96 6e-21
AT4G11670.1 | chr4:7044401-7052971 REVERSE LENGTH=1118 67 4e-12
>AT2G33420.1 | chr2:14158782-14162304 FORWARD LENGTH=1040
Length = 1039
Score = 149 bits (377), Expect = 4e-37, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 95/148 (64%), Gaps = 8/148 (5%)
Query: 1 MRASFEAFLMVLLAGGGDRSFARGDHAMVEEDFRSLRRAFCTCGEGLVPXXXXXXXXXXX 60
M++SFEAFLMVLLAGG R F R DH+++EEDF +L+R FCTCGEGL+P
Sbjct: 900 MKSSFEAFLMVLLAGGYSRVFYRSDHSIIEEDFENLKRVFCTCGEGLIPEEVVDREAETV 959
Query: 61 XXXXXLMARPTDALIDAFGVATSESIVAAVXXXXXXXXXXXXXVTPVPPTSRRWDAADAN 120
LM++PT+ L++ F + T E+ + P+PPT+ RW+ +D N
Sbjct: 960 EGVIQLMSQPTEQLMEDFSIVTCETSGMGMVGSGQKL--------PMPPTTGRWNRSDPN 1011
Query: 121 TILRVLCHRDDEAASQFLKRTFQLAKRR 148
TILRVLCHR+D A+QFLK++FQL KRR
Sbjct: 1012 TILRVLCHRNDRVANQFLKKSFQLPKRR 1039
>AT1G04470.1 | chr1:1211177-1214591 REVERSE LENGTH=1036
Length = 1035
Score = 143 bits (360), Expect = 4e-35, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 90/148 (60%), Gaps = 8/148 (5%)
Query: 1 MRASFEAFLMVLLAGGGDRSFARGDHAMVEEDFRSLRRAFCTCGEGLVPXXXXXXXXXXX 60
M+ASFE L VLLAGG R F R DH ++EEDF SL++ +CTCGEGL+P
Sbjct: 896 MKASFEVVLTVLLAGGHSRVFCRTDHDLIEEDFESLKKVYCTCGEGLIPEEVVDREAETV 955
Query: 61 XXXXXLMARPTDALIDAFGVATSESIVAAVXXXXXXXXXXXXXVTPVPPTSRRWDAADAN 120
LM +PT+ L++ F + T ES + P+PPT+ RW+ +D N
Sbjct: 956 EGVIQLMGQPTEQLMEDFSIVTCESSGMGLVGTGQKL--------PMPPTTGRWNRSDPN 1007
Query: 121 TILRVLCHRDDEAASQFLKRTFQLAKRR 148
TILRVLC+RDD A+QFLK++FQL KRR
Sbjct: 1008 TILRVLCYRDDRVANQFLKKSFQLGKRR 1035
>AT2G25800.1 | chr2:11006138-11009728 REVERSE LENGTH=988
Length = 987
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 1 MRASFEAFLMVLLAGGGDRSFARGDHAMVEEDFRSLRRAFCTCGEGLVPXXXXXXXXXXX 60
MRAS + FL+VLLAGG R+F R D ++EEDF+S++ F G+GL
Sbjct: 852 MRASLDGFLLVLLAGGPSRAFTRQDSQIMEEDFKSMKDMFWANGDGLA-MDLIDKFSTTV 910
Query: 61 XXXXXLMARPTDALIDAFGVATSESIVAAVXXXXXXXXXXXXXVTPVPPTSRRWDAADAN 120
L + TD+LI+ F T E+ ++ P+PPTS +W+ + N
Sbjct: 911 RGVLPLFSTDTDSLIERFKGTTLEAYGSSAKSRL-----------PLPPTSGQWNGMEPN 959
Query: 121 TILRVLCHRDDEAASQFLKRTFQLAKR 147
T+LRVLC+R+DE+A++FLK+T+ L K+
Sbjct: 960 TLLRVLCYRNDESATRFLKKTYNLPKK 986
>AT2G20010.2 | chr2:8637977-8641184 REVERSE LENGTH=953
Length = 952
Score = 96.3 bits (238), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 1 MRASFEAFLMVLLAGGGDRSFARGDHAMVEEDFRSLRRAFCTCGEGLVPXXXXXXXXXXX 60
MRASF+ FL+VLLAGG R F D A VEEDF+ L F + G+GL P
Sbjct: 817 MRASFDGFLLVLLAGGPSRGFTIQDSAAVEEDFKFLCDLFWSNGDGL-PLDLIEKVSTTV 875
Query: 61 XXXXXLMARPTDALIDAFGVATSESIVAAVXXXXXXXXXXXXXVTPVPPTSRRWDAADAN 120
L+ TD+LI+ F E+ P+PPTS W + N
Sbjct: 876 KSILPLLRTDTDSLIERFKAVCLEN------------HGSDRGKLPLPPTSGPWSPTEPN 923
Query: 121 TILRVLCHRDDEAASQFLKRTFQLAKR 147
T+LRVLC+R DE A++FLK+T+ L ++
Sbjct: 924 TLLRVLCYRYDEPATKFLKKTYNLPRK 950
>AT4G11670.1 | chr4:7044401-7052971 REVERSE LENGTH=1118
Length = 1117
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
Query: 2 RASFEAFLMVLLAGGGDRSFARGDHAMVEEDFRSLRRAFCTCGEGLVPXXXXXXXXXXXX 61
R++ EA++ VLL GG R+F+ D ++EED L+ F GEGL P
Sbjct: 941 RSALEAYVRVLLDGGPTRAFSDSDITLMEEDLSILKEFFIADGEGL-PRSLVEQEAKQAK 999
Query: 62 XXXXLMARPTDALIDAFGVATSESIVAAVXXXXXXXXXXXXXVTPVPPTSRRWDAADANT 121
L + +D LI A SE I V +S + DA T
Sbjct: 1000 EILDLYSLESDMLIQMLMTA-SELINMGV-------------------SSEQRRLEDAQT 1039
Query: 122 ILRVLCHRDDEAASQFLKRTFQL 144
++RVLCH+ D AS+FLKR ++L
Sbjct: 1040 LVRVLCHKKDRNASKFLKRQYEL 1062
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,307,008
Number of extensions: 60255
Number of successful extensions: 114
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 5
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 107 (45.8 bits)