BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0465900 Os10g0465900|AK110879
(223 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28706.4 | chr4:14167805-14172254 FORWARD LENGTH=441 224 3e-59
AT5G43910.2 | chr5:17667537-17670085 REVERSE LENGTH=366 191 4e-49
>AT4G28706.4 | chr4:14167805-14172254 FORWARD LENGTH=441
Length = 440
Score = 224 bits (571), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 150/222 (67%), Gaps = 4/222 (1%)
Query: 1 MDIQMRWPWQLLSRNVQADQMKIPILVDAEPERTREELGGLLSLASYIVCNGKFPEKWTS 60
D+++ ++++ +A + KIPILVD E + R+ L LL A Y+VC FP+ WT
Sbjct: 186 FDVRLHETALVIAK--EASRKKIPILVDTE--KKRDGLDDLLPFADYVVCPENFPQTWTE 241
Query: 61 VPSIPSALLEILLQYPRACFAVVTLGENGCMMLERGKDGENYETEPVDIENVAESLRLKV 120
V S P AL+ +LL+ P+ F +VT GE+GC+M++R E +E++ DIE++ E+L+ +
Sbjct: 242 VSSTPGALVSMLLRLPKLKFVIVTSGEHGCLMVQRASKAEVFESQETDIESLLETLKHRK 301
Query: 121 DKDDILPTCVSSKFMRLTARGSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLHGL 180
D PTCVSS+ +L A G G + RL +GTAE IP ELVDTTG GDAFIGAVL+ +
Sbjct: 302 DSTTTFPTCVSSETTKLKANGVGTMTGRLFLGTAEKIPPEELVDTTGAGDAFIGAVLYAI 361
Query: 181 STEMPPEKMLPFACQVAGIKCRAIGARSGLPWQSDPRLTKYL 222
MPPEKMLPFA QVAG CRA+GAR+GLP ++DPRL +L
Sbjct: 362 CAGMPPEKMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPFL 403
>AT5G43910.2 | chr5:17667537-17670085 REVERSE LENGTH=366
Length = 365
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 136/206 (66%), Gaps = 6/206 (2%)
Query: 17 QADQMKIPILVDAEPERTREELGGLLSLASYIVCNGKFPEKWTSVPSIPSALLEILLQYP 76
+A IPIL++AE +RT L L+ LA Y +C+ FP++WT PS PSALL +L++ P
Sbjct: 164 KAHSKNIPILINAEKKRT--GLDELIDLADYAICSTNFPQEWTGAPSSPSALLSMLIRLP 221
Query: 77 RACFAVVTLGENGCMMLERGKDGENYETEPVDIENVAESLRLKVDKDDILPTCVSSKFMR 136
+ F ++TLGE+GC+MLER + E DI+ + ESL+ D +LP C SS R
Sbjct: 222 KLKFVIMTLGEHGCVMLERCSSEVSGSEEETDIDELHESLKQSTDFTSVLPVCNSSLVTR 281
Query: 137 LTARGSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLHGLSTEMPPEKMLPFACQV 196
LT GN+ RL+I TAE IP+SEL+DTTG GDAF GA+L+GL T M E+ML FA +V
Sbjct: 282 LT----GNVTGRLVIVTAEKIPSSELIDTTGAGDAFTGALLYGLCTGMALEEMLTFASRV 337
Query: 197 AGIKCRAIGARSGLPWQSDPRLTKYL 222
A CR +GAR+ LP+++DP L +L
Sbjct: 338 AACCCRGLGARTSLPYRTDPNLATFL 363
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,989,517
Number of extensions: 203013
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 128
Effective length of database: 8,502,049
Effective search space: 1088262272
Effective search space used: 1088262272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)