BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0463800 Os10g0463800|AK102352
(364 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07040.1 | chr1:2161225-2163035 REVERSE LENGTH=372 434 e-122
AT1G27030.1 | chr1:9381842-9383712 FORWARD LENGTH=311 325 2e-89
AT1G27020.1 | chr1:9378635-9380419 FORWARD LENGTH=309 317 7e-87
>AT1G07040.1 | chr1:2161225-2163035 REVERSE LENGTH=372
Length = 371
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/299 (67%), Positives = 241/299 (80%), Gaps = 1/299 (0%)
Query: 67 DSFFRTVISNMEKVYLSRNPTAKTILELVRSYDGDHICYDHFAFRTFGVDGYGIKSLAEF 126
+SFFR+V+ ME VYL+RNPT K++LELVRS D +CYDH AFRTFG+ GYGI SLA F
Sbjct: 73 ESFFRSVLGQMETVYLNRNPTPKSVLELVRSVDDQQLCYDHLAFRTFGIGGYGIDSLASF 132
Query: 127 FTDFGYVPREELRFPAKKLRALWFSPPTNDGYTG-TGVYGPLPRIFISELLVDELSPQSQ 185
F D+GY P +EL+FPAKKLRALWF+PP G +GV GPLPR+FISELLVD++S Q+Q
Sbjct: 133 FLDYGYTPMDELKFPAKKLRALWFAPPNASAVPGGSGVNGPLPRVFISELLVDQMSSQTQ 192
Query: 186 DIIQKYIRTSGKGNKHATLASTSGELTWEKPIYSDFQVLSRESEYAAWTLVNGYALNHTT 245
D+I+KY S G K+A L+S G LTWEKP+ S+F+ L+RESEYAAWTLVNGYALNH T
Sbjct: 193 DVIRKYTEASPNGKKYAGLSSALGTLTWEKPLSSEFEQLARESEYAAWTLVNGYALNHVT 252
Query: 246 ISTHRLISDIRSINKFNKFVEDNGFKLNSEGGILKVSPDGLLQQSSTVADSALFTFADGI 305
IS HRL S + I K N+F+E+ G KLNSEGG+LKVSPDG LQQSSTVADS F FADG+
Sbjct: 253 ISVHRLKSHLNKIKKLNQFLEEKGIKLNSEGGVLKVSPDGGLQQSSTVADSISFKFADGV 312
Query: 306 TESIPRSYIEFAERLVLPQFKDLPNDEVNEHHRRDGFEVGNADKIFESTSNDQLTRRSA 364
T+SIP SYIEFAERLVLPQ++++P E+ E HRRDGFEVGNADKIFEST +QL+RR+
Sbjct: 313 TKSIPCSYIEFAERLVLPQYQNIPESEIQESHRRDGFEVGNADKIFESTFQEQLSRRTG 371
>AT1G27030.1 | chr1:9381842-9383712 FORWARD LENGTH=311
Length = 310
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 162/290 (55%), Positives = 206/290 (71%), Gaps = 8/290 (2%)
Query: 69 FFRTVISNMEKVYLSRNPTAKTILELVRSYDGDHICYDHFAFRTFGVDGYGIKSLAEFFT 128
F R V N+ K YL +NPTAKTI ELV+S D + ICYDHF FRT VDGYGI SL+ FF
Sbjct: 19 FLRNVFENILKTYLRKNPTAKTIWELVQSLDNEKICYDHFTFRTLKVDGYGIDSLSSFFM 78
Query: 129 DFGYVPREELRFPAKKLRALWFSPP----TNDGYTGTGVYGPLPRIFISELLVDELSPQS 184
+GY L FP KKLR LWFSPP NDG+ G G GPLPR+ I+E+LVDELSP+S
Sbjct: 79 AYGYKIGGGLDFPKKKLRVLWFSPPDVHVPNDGH-GLG-NGPLPRLVIAEVLVDELSPES 136
Query: 185 QDIIQKYIRTSGKGNKHATLASTSGELTWEKPIYSDFQVLSRESEYAAWTLVNGYALNHT 244
Q II+KY++ +G K A L+ST G L WEKP ++DF+ L++ESE+AAWTL++GY +NH
Sbjct: 137 QGIIRKYLKQ--EGGKQAVLSSTLGSLIWEKPTWTDFKQLAKESEFAAWTLIHGYTMNHL 194
Query: 245 TISTHRLISDIRSINKFNKFVEDNGFKLNSEGGILKVSPDGLLQQSSTVADSALFTFADG 304
+ HR I + +E+ GFKLNS+G ILKVS DGLL Q S++++ TFADG
Sbjct: 195 AFAVHRFKHRFSDIKFVKQRLEEKGFKLNSDGEILKVSQDGLLFQVSSISERLPVTFADG 254
Query: 305 ITESIPRSYIEFAERLVLPQFKDLPNDEVNEHHRRDGFEVGNADKIFEST 354
+TE+IP SYIEF +R VLP+FKD+P DE+ E HRR+ FE+ NA+ + EST
Sbjct: 255 VTETIPASYIEFTQRQVLPEFKDVPLDEIKEFHRREAFELDNANHVMEST 304
>AT1G27020.1 | chr1:9378635-9380419 FORWARD LENGTH=309
Length = 308
Score = 317 bits (812), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 157/292 (53%), Positives = 203/292 (69%), Gaps = 8/292 (2%)
Query: 67 DSFFRTVISNMEKVYLSRNPTAKTILELVRSYDGDHICYDHFAFRTFGVDGYGIKSLAEF 126
++F + V ++ K YL +NP AKTI ELV+S D + I YDHF FRTF VDGYGI SLA F
Sbjct: 17 ETFLQNVFESILKTYLRKNPMAKTIWELVKSVDNEKISYDHFFFRTFKVDGYGIDSLASF 76
Query: 127 FTDFGYVPREELRFPAKKLRALWFSPP----TNDGYTGTGVYGPLPRIFISELLVDELSP 182
F D+GY L FP KK++ LW SPP ++GY G G GPLPR+ I+ELLV+ELSP
Sbjct: 77 FMDYGYKVGGRLDFPKKKVQVLWLSPPDVHFPDNGY-GIG-NGPLPRLVIAELLVEELSP 134
Query: 183 QSQDIIQKYIRTSGKGNKHATLASTSGELTWEKPIYSDFQVLSRESEYAAWTLVNGYALN 242
+SQ+II+KY++ +G K A L+ST G L WEKP +DF L++ESE+AAWTLV GY +N
Sbjct: 135 ESQEIIRKYLKP--EGGKQAVLSSTLGSLIWEKPTSTDFNQLAKESEFAAWTLVYGYTMN 192
Query: 243 HTTISTHRLISDIRSINKFNKFVEDNGFKLNSEGGILKVSPDGLLQQSSTVADSALFTFA 302
H + HRL I ++ E+NGF+LN +GG+LKVS D LL Q S +++ + FA
Sbjct: 193 HLAFAVHRLKHRFSDIKCVKEYFEENGFELNKDGGVLKVSEDSLLLQVSAMSEKLVVEFA 252
Query: 303 DGITESIPRSYIEFAERLVLPQFKDLPNDEVNEHHRRDGFEVGNADKIFEST 354
DG+T+ +P SYIEF ERLVLPQFKD+P DE+ E HRR+G E +A I EST
Sbjct: 253 DGVTQIVPASYIEFVERLVLPQFKDMPCDEIKEFHRREGLEQASAYHIMEST 304
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,206,987
Number of extensions: 312922
Number of successful extensions: 683
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 3
Length of query: 364
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,364,969
Effective search space: 2208351816
Effective search space used: 2208351816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)