BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0461100 Os10g0461100|AK065396
(537 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55330.1 | chr3:20514031-20515275 REVERSE LENGTH=231 267 1e-71
AT1G22700.1 | chr1:8028323-8029878 REVERSE LENGTH=302 148 6e-36
AT2G39470.1 | chr2:16476335-16477653 FORWARD LENGTH=239 142 4e-34
AT3G04260.1 | chr3:1123231-1127515 REVERSE LENGTH=911 81 1e-15
AT3G05410.2 | chr3:1554783-1561456 FORWARD LENGTH=281 65 1e-10
AT4G15510.1 | chr4:8860701-8862529 FORWARD LENGTH=288 51 1e-06
>AT3G55330.1 | chr3:20514031-20515275 REVERSE LENGTH=231
Length = 230
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 122/157 (77%), Positives = 137/157 (87%)
Query: 365 AAEAKKGFLPVTDKKDGYSFLYPFGWQEVVVQGQDKVYKDVIEPLESVSVNTIPTSKQDI 424
AAE+KKGFL V+D KD Y+FLYPFGWQEVV++GQDKVYKDVIEPLESVSVN +PTSKQ I
Sbjct: 74 AAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTI 133
Query: 425 RELGPPDQVAEALIRKVLAAPTQKTKLIEAKENDVDGRTYYTFEFTAQAPNFTRHALGAI 484
+E GPP Q+AE LI+KVLA P QKT LI+A E+DVDG+TYY FEFT QA N+TRHALG I
Sbjct: 134 KEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTI 193
Query: 485 AIANGKFYTLTTGANERRWEKIKDRLHTVVDSFKIEV 521
+ NG FYTLTTGANERRWEK+KDRLHTVVDSFKI V
Sbjct: 194 TVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKITV 230
>AT1G22700.1 | chr1:8028323-8029878 REVERSE LENGTH=302
Length = 301
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/112 (68%), Positives = 83/112 (74%)
Query: 178 QTAQASEGTNINMVYEVGELFEXXXXXXXXXXXXXXXXXXTFFVIRQVLVRRELDLSAKE 237
Q A A+E +YEVGELFE TF+VIRQVLVRRELDLSAKE
Sbjct: 97 QLAAAAEIIKPEPIYEVGELFELSIQLSYLLLLLGLLGVGTFYVIRQVLVRRELDLSAKE 156
Query: 238 LQEQVRSGDASATEYFELGAVMLRRKFYPAAIKYLQQAIQKWDRDEQDLAQM 289
LQEQVRSGDASATE FELGAVMLRRKFYPAA K+LQQAIQKWD D+QDLAQ+
Sbjct: 157 LQEQVRSGDASATELFELGAVMLRRKFYPAANKFLQQAIQKWDGDDQDLAQV 208
>AT2G39470.1 | chr2:16476335-16477653 FORWARD LENGTH=239
Length = 238
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 95/171 (55%)
Query: 349 AAGAAVFLSWPNLAANAAEAKKGFLPVTDKKDGYSFLYPFGWQEVVVQGQDKVYKDVIEP 408
G V S P A E K + P D++DGYS+ YP W+E + D +KD
Sbjct: 65 GVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQ 124
Query: 409 LESVSVNTIPTSKQDIRELGPPDQVAEALIRKVLAAPTQKTKLIEAKENDVDGRTYYTFE 468
L++V V IPT K DI E+GP ++V L++ AAP Q + + KE DG+ YYTFE
Sbjct: 125 LQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYTFE 184
Query: 469 FTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWEKIKDRLHTVVDSFKI 519
+ + P + + +A+ N ++YTL GANERRW K+K +L V DS KI
Sbjct: 185 YGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKI 235
>AT3G04260.1 | chr3:1123231-1127515 REVERSE LENGTH=911
Length = 910
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 65 VAAGRSPGPRSFHGLV----LSGNAEGAMQSLRRELSSGMHPLRENFVALVHVFAKNDLT 120
+AAG SPGPRSFHGLV L+G+ +GAM SLR+EL +G PL E +ALV +
Sbjct: 100 IAAGLSPGPRSFHGLVVAHALNGDEQGAMHSLRKELGAGQRPLPETMIALVRLSGSKGNA 159
Query: 121 TKGMEILAAMER 132
T+G+EILAAME+
Sbjct: 160 TRGLEILAAMEK 171
>AT3G05410.2 | chr3:1554783-1561456 FORWARD LENGTH=281
Length = 280
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 360 NLAANAAEAKKGFLPVTDKKDGYSFLYPFGW---QEVVVQGQDKV--------------- 401
NL + G+ D +G+ F+YP W Q ++ + +K
Sbjct: 84 NLKLDVIYPIGGYSRCIDTVEGFEFIYPATWVGDQTLLYRAAEKSERENSLDLPPARNSR 143
Query: 402 YKDVIEPLES-----------VSVNTIPTSKQ-DIRELGPPDQVAEALIRKVLAAPTQ-- 447
K+V EP+ + VSV P S I G P +V EA++R V + +
Sbjct: 144 RKNVNEPVVAFGPPGSTGELNVSVIVSPVSPSFSIEAFGGPKEVGEAIVRTVTGSGQRAD 203
Query: 448 -KTKLIEA--KENDVDGRTYYTFEFTAQAPNFTRHALGAIAIANGKFYTLTTGANERRWE 504
K L+E+ +++ YY EF ++P F RH + +G+ YTL A E W
Sbjct: 204 LKGTLLESSIRQDSERNLKYYELEFKVESPLFRRHNVAVCCAHSGRLYTLNAQAPESAWS 263
Query: 505 KIKDRLHTVVDSFKI 519
++K ++T SF I
Sbjct: 264 EVKSEIYTTAKSFNI 278
>AT4G15510.1 | chr4:8860701-8862529 FORWARD LENGTH=288
Length = 287
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 372 FLPVTDKKDGYSFLYPFGWQEVVVQGQDKVYKDVIEPLESVSVN---TIPTSKQDIRELG 428
F D DGYSF YP W +V G D ++D + E++SV ++ + +LG
Sbjct: 109 FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLG 168
Query: 429 PPDQVAEALIRKVLAAPTQKTKLIEAKENDV---------DGRTYYTFEFTAQA------ 473
P++V + ++R+ L T+L ++ ++ DG+ YY E ++
Sbjct: 169 SPEEVGKRVLRQYLTE-FMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNE 227
Query: 474 ----PN-------FTRHALGAIAIANGKFYTLTTGANERRWEKIKDRLHTVVDSFKIE 520
P + R L + + N + Y++ E+ + + + L V+DSF++E
Sbjct: 228 LAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE 285
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,381,117
Number of extensions: 346341
Number of successful extensions: 1142
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 6
Length of query: 537
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 434
Effective length of database: 8,282,721
Effective search space: 3594700914
Effective search space used: 3594700914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)