BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0457400 Os10g0457400|AK063553
         (351 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04320.2  | chr5:1209613-1212376 FORWARD LENGTH=471             89   3e-18
AT3G10440.1  | chr3:3245376-3248987 FORWARD LENGTH=573             65   4e-11

>AT5G04320.2 | chr5:1209613-1212376 FORWARD LENGTH=471
          Length = 470

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 8/86 (9%)

Query: 89  AQLVKENSELVRLLEERDKIIELSGTELQKLRL-------ANWQLAQANSQMLAELNLGR 141
           A+L KEN  L++ L  R+K++ELSG E+QKLR+        N QLAQANSQMLAELN  R
Sbjct: 45  AKLQKENMTLMKALAHRNKLVELSGIEIQKLRINLRSVQEKNLQLAQANSQMLAELNTNR 104

Query: 142 DRLKKLQHQLACSRAVIATKTSELEE 167
           DRLK LQH+L C  A++  K   LEE
Sbjct: 105 DRLKDLQHELGCKNALLKVK-KHLEE 129



>AT3G10440.1 | chr3:3245376-3248987 FORWARD LENGTH=573
          Length = 572

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 17/163 (10%)

Query: 52  AARRKTLCDITNLRPRPAAAVEQDGATCAADAGGVAQAQ----LVKENSELVRLLEERDK 107
           +A+R+ L DITNL+ +    +   GA     A  ++  +    L KEN++L++++ ERD 
Sbjct: 35  SAQRRKLGDITNLQNQKN--LMNQGAKHQQQAILISSKENAENLQKENTKLMKVVMERDG 92

Query: 108 I---IELSGTELQKLRLANWQLAQANSQMLAELNLGRDRLKKLQHQLACSRAVIATKTSE 164
           I   ++    E QK++  N  LAQAN+++LAE N  +D+LK LQH+L C   ++      
Sbjct: 93  IKSDLKKLRIEFQKVQEQNLLLAQANTRILAEFNTSKDQLKVLQHELGCKNGLVM----- 147

Query: 165 LEEAKKAMKRNRNLPLPEKAPPASETAQQQQGSDRAAQIKDGD 207
              A+K + + + LP    A      A    G+ +  Q  D D
Sbjct: 148 ---ARKMLLKEQTLPCTRHASKVKAQANACGGACKTFQPNDAD 187



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.126    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,441,613
Number of extensions: 182725
Number of successful extensions: 545
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)