BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0455900 Os10g0455900|AK072120
(315 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45560.1 | chr5:18465561-18470752 FORWARD LENGTH=720 384 e-107
AT4G19040.2 | chr4:10431799-10437171 REVERSE LENGTH=725 372 e-104
AT3G54800.1 | chr3:20286378-20289880 FORWARD LENGTH=734 85 5e-17
AT2G28320.1 | chr2:12095161-12099424 FORWARD LENGTH=738 85 5e-17
AT5G35180.4 | chr5:13424538-13432787 FORWARD LENGTH=812 79 2e-15
>AT5G45560.1 | chr5:18465561-18470752 FORWARD LENGTH=720
Length = 719
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/263 (70%), Positives = 214/263 (81%), Gaps = 5/263 (1%)
Query: 8 VVYEGWMVRYGRRKIGRSFIHMRYFVLETRLLSYYKRKPQHKMPKLPIKSLHIDGNCRVE 67
VVYEGWMVRYGRRKIGRS+IHMRYFVLE RLL+YYK+KPQ +LPIK++ IDGNCRVE
Sbjct: 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDN--QLPIKTMVIDGNCRVE 61
Query: 68 DRGLKMHHGHMLYVLCVYNKREKHQRITMAAFNIQEALIWKEKIEMVIDQQQGVVASDGN 127
DRGLK HHGHM+YVL +YNK+EKH RITMAAFNIQEAL+WKEKIE VIDQ Q + G
Sbjct: 62 DRGLKTHHGHMVYVLSIYNKKEKHHRITMAAFNIQEALMWKEKIECVIDQHQDSLVPSGQ 121
Query: 128 LAHSSSQQKVSLENGRKSSFSDHESLYSHXXXXXXXDNQRSLMRRTTIGNGPPESLYDWT 187
+ S + K ++ GR +S SDHES +S D+QR L+RRTTIGNGPPES+ DWT
Sbjct: 122 -QYVSFEYKPGMDAGRTASSSDHESPFS--ALEDENDSQRDLLRRTTIGNGPPESILDWT 178
Query: 188 RENDLGISNQGSPDHVFSRRHWRLVRCQNGLRIFEELQDVDYLARSCSRAMKAVGVVEAS 247
+E D +SNQ S + FSR+HWRL++CQNGLRIFEEL +VDYL RSCSRAMKAVGVVEA+
Sbjct: 179 KEFDAELSNQSSSNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEAT 238
Query: 248 CEAIFQLVMSMDTTRYEWDCSFH 270
CE IF+LVMSMD TRYEWDCSFH
Sbjct: 239 CEEIFELVMSMDGTRYEWDCSFH 261
>AT4G19040.2 | chr4:10431799-10437171 REVERSE LENGTH=725
Length = 724
Score = 372 bits (956), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/268 (67%), Positives = 213/268 (79%), Gaps = 7/268 (2%)
Query: 8 VVYEGWMVRYGRRKIGRSFIHMRYFVLETRLLSYYKRKPQHKMPKLPIKSLHIDGNCRVE 67
VVYEGWMVRYGRRKIGRS+IHMRYFVLE RLL+YYK+KPQ ++PIK++ IDGNCRVE
Sbjct: 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDY--QVPIKTMLIDGNCRVE 61
Query: 68 DRGLKMHHGHMLYVLCVYNKREKHQRITMAAFNIQEALIWKEKIEMVIDQQQGVVASDGN 127
DRGLK HHGHM+YVL VYNK+EK RITMAAFNIQEAL+WKEKIE VIDQ Q +G
Sbjct: 62 DRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQ 121
Query: 128 LAHSSSQQKVSLENGRKSSFSDHESL----YSHXXXXXXXDNQRSLMRRTTIGNGPPESL 183
+ S + K ++ GR +S SDHES + D++RSLMRRTTIGNGPPES+
Sbjct: 122 -QYVSFEYKSGMDTGRTASSSDHESQSAISFRFSAAEDEEDSRRSLMRRTTIGNGPPESV 180
Query: 184 YDWTRENDLGISNQGSPDHVFSRRHWRLVRCQNGLRIFEELQDVDYLARSCSRAMKAVGV 243
DWT+E D ++NQ S + FSR+HWRL++CQNGLRIFEEL +VDYL RSCSRAMKAVGV
Sbjct: 181 LDWTKEFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGV 240
Query: 244 VEASCEAIFQLVMSMDTTRYEWDCSFHW 271
VEA+CE IF+L+MSMD TRYEWDCSF +
Sbjct: 241 VEATCEEIFELLMSMDGTRYEWDCSFQF 268
>AT3G54800.1 | chr3:20286378-20289880 FORWARD LENGTH=734
Length = 733
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 111/274 (40%), Gaps = 55/274 (20%)
Query: 11 EGWMVRYGRRKIGRSFIHMRYFVLETRLLSYYKRKPQHKMPKLPIKSLHIDGNCRVEDRG 70
EGW+ + G F RYFVL L+ +K P + P + +D RV D G
Sbjct: 11 EGWLYTIRHNRFGLQFSRKRYFVLHENNLTSFKSVPSDHNEE-PERRASLDCCIRVTDNG 69
Query: 71 LKMHHGHMLYVLCVYNKREKHQRITMAAFNIQEALIWKEKIEMVIDQQQGVVASDGNLAH 130
+ H +L++ +YN ++ + A + +EA W ++ Q+G D
Sbjct: 70 RESFHRKILFIFTLYNTSNHLDQLKLGASSPEEAAKWIRSLQDA--SQKGFPIPDCEFFV 127
Query: 131 SSSQQ-----KVSLENGRKSSFSDHESLYSHXXXXXXXDNQRSLMRRTTIGNGPPESLYD 185
S +++ VS N RK+S D
Sbjct: 128 SHAEKGLVKLDVSKRNRRKNSV-------------------------------------D 150
Query: 186 WTREND-------LGISNQGSPDHVFSRRHWRLVRCQNGLRIFEELQDVDYLARSCS--R 236
WT + L + +PD V + W++ CQNGLR+F+E +D D R
Sbjct: 151 WTNYSSTNYSSTSLNVETNVAPD-VIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHP 209
Query: 237 AMKAVGVVEASCEAIFQLVMSMDTTRYEWDCSFH 270
A+ AVGV++ + E IF +MS+ R EWD F+
Sbjct: 210 AIMAVGVIDGTSEDIFNTLMSLGPLRSEWDFCFY 243
>AT2G28320.1 | chr2:12095161-12099424 FORWARD LENGTH=738
Length = 737
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 38/261 (14%)
Query: 11 EGWMVRYGRRKIGRSFIHMRYFVLETRLLSYYKRKPQHKMPKLPIKSLHIDGNCRVEDRG 70
EGW+ + G F RYFVL LL +K K K +S ID RV D G
Sbjct: 14 EGWLYIIRSNRFGLHFSRKRYFVLGDHLLKSFKSISDSKT-KNAGRSAVIDSCIRVTDNG 72
Query: 71 LKMHHGHMLYVLCVYNKREKHQRITMAAFNIQEALIWKEKIEMVIDQQQGVVASDGNLAH 130
+ H ++ +YN + ++ + A + ++A W I ++ + G++ +
Sbjct: 73 RENVHRKAFFIFTLYNTSNHNDQLKLGASSPEDAARW---INLIKEAALKGAPFPGDVFN 129
Query: 131 SSSQQKVSLENGRKSSFSDHESLYSHXXXXXXXDNQRSLMRRTTIGNGPPESLYDWTREN 190
S + SL SS DH S + DWT +
Sbjct: 130 CSRSRWDSLR--LSSSVRDHHS-----------------------------NSIDWTLRS 158
Query: 191 DLGISNQGSPDHVFSRRHWRLVRCQNGLRIFEELQDVDYLAR-SCSRAMKAVGVVEASCE 249
+ + V + W + CQNGLR+F+E ++ D L R A+ AVGVV+ + E
Sbjct: 159 SARVDPVTT--DVVAPSPWTIFGCQNGLRLFKEAKERDSLGRWDDHPAIMAVGVVDGTSE 216
Query: 250 AIFQLVMSMDTTRYEWDCSFH 270
IFQ ++S+ +R EWD F+
Sbjct: 217 TIFQTLLSLGPSRSEWDFCFY 237
>AT5G35180.4 | chr5:13424538-13432787 FORWARD LENGTH=812
Length = 811
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 125/276 (45%), Gaps = 36/276 (13%)
Query: 10 YEGWMVRYGRRKIGRSFIHMRYFVLETRLLSYYKRKPQHKMPKL-PIKSLHIDGNCRVED 68
Y GW+ G KIG + ++R+ + + + YKR P H+ P + PI+ I +E+
Sbjct: 60 YFGWVYHLGVNKIGHEYCNLRFLFIRGKYVEMYKRDP-HENPDIKPIRRGVIGPTMVIEE 118
Query: 69 RG-LKMHHGHMLYVLCVYNKREKHQRITMAAFNIQEALIWKEKIEMVIDQQQGVVASDGN 127
G K++HG +YV+ YN+ ++ ++ +A EAL W E E Q + ++ G
Sbjct: 119 LGRRKVNHGD-VYVIRFYNRLDESRKGEIACATAGEALKWVEAFEEAKQQAEYALSRGG- 176
Query: 128 LAHSSSQQKVSLENGRKSSFSDHESLYSHXXXXXXXDNQRSLMRRTTIGNGPPESLY--D 185
S++ K+S+E + L H L + IG G PESL
Sbjct: 177 ----STRTKLSMEA--------NIDLEGHRPRVRRY--AYGLKKLIRIGQG-PESLLRQS 221
Query: 186 WTRENDL---GISNQGSPDHVFSRRHWRLVRCQNGL-RIFEEL---------QDVDYLAR 232
T ND+ G G W+ VR N + R+F ++ +DV
Sbjct: 222 STLVNDVRGDGFYEGGDNGDAIEAHEWKCVRTINVIKRLFGKIVVLKRVRIFEDVANFKA 281
Query: 233 SCSRAMKAVGVVEASCEAIFQLVMSMDT-TRYEWDC 267
+KAV VVEAS + +F++++++D RYEWD
Sbjct: 282 GRGVLVKAVAVVEASADTVFEVLLNIDKHQRYEWDA 317
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,641,700
Number of extensions: 262568
Number of successful extensions: 752
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 6
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)