BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0446200 Os10g0446200|AK121939
         (859 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46060.1  | chr2:18941355-18945000 REVERSE LENGTH=808          628   e-180

>AT2G46060.1 | chr2:18941355-18945000 REVERSE LENGTH=808
          Length = 807

 Score =  628 bits (1619), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 335/795 (42%), Positives = 451/795 (56%), Gaps = 70/795 (8%)

Query: 37  VGSYGQPRLWLKPYDWSYLRVELPPSFSSVTMDFATDRDIQREHLKDLPRRDLAIICLMN 96
           V S+  P   ++PYD  Y+RV+LPP FSS+ +   +D DI  + +  + +  L +IC  +
Sbjct: 38  VSSFRYPESEVRPYDTRYIRVDLPPWFSSLNVAIESDVDITAKSISKISKSLLPVICFRD 97

Query: 97  SNPPIPDISDSFLDTLLSNFLVVGSFGSTNNQSDLAQCIPFQKNTTIVLRNDQISPGIWY 156
            +PP+PD S + L  L       GSF    +     QC P QKN T+ L N+QISPG WY
Sbjct: 98  GSPPLPDASTNALQGLELGRFFNGSFERAQDSEIAQQCYPMQKNITLRLTNEQISPGAWY 157

Query: 157 IGYFNGLGPARTQSKMISRGRARSVSTSITVEGCPTSALWGPYCNQTIEMISCSQSSGYN 216
           +G FNG+G  RTQ KMI R  A S S +I+VEGC T+ +WGP+CNQTI  +SC       
Sbjct: 158 VGLFNGIGATRTQGKMIVRSSAFSFSANISVEGCKTATMWGPFCNQTIYPLSC------- 210

Query: 217 NSRNLMGLNIDKRKTLNTREHTRRINFLSQWNHLEEKGVGSNSTTYSRMDNS----ITCA 272
                                                         SR DN     I+CA
Sbjct: 211 ----------------------------------------------SRFDNQTASVISCA 224

Query: 273 ISNGSLCLRQGDMKFYFLDVVDLALQFEITATNFGL-AQRSSLICYLRYNAFPRRDLHDY 331
            S  S CL   + K Y LDV  +A Q  I A+N  + +  S L+CY R+ AF    LHDY
Sbjct: 225 DSFPSSCLTGAETKTYALDVDGIAEQLVIMASNVKVDSNESYLMCYARFEAFASETLHDY 284

Query: 332 SGDISSAPLVLKLPNIGRWYIAIETVNITQMNSTASTPLLDTTCFSLEWQVTGCLNGKAG 391
           + DI   PL++  P  GRWYI I +++  +      T      CFS+  +V GC  GKAG
Sbjct: 285 AADIHKVPLIVNKPKAGRWYIVI-SLSGRENRFAQGTNSSSRVCFSINVKVLGCPVGKAG 343

Query: 392 TNCSWEAYVLQRVPKRSPSVPFESYYVP-SDGKASLEYSHFSLEQFLSNSSFEP----FA 446
            NC  + Y+LQ V +R    PF+SYY P +D   S   ++F LE  +SN S  P      
Sbjct: 344 PNCGQQIYILQAVMRRGWLTPFQSYYFPVNDASLSGSSTNFPLEPIVSNFSSIPELDTST 403

Query: 447 WTYFFLDIPEGSAGALIHVQIKSDKELNYELYSRYGGLPSNESWDYYASRTSSSNGSVYF 506
           WTYF ++IP+G +G  IH ++ SD  + YE+Y R+GGLP+ +  DYY    +S++ S++F
Sbjct: 404 WTYFLMNIPQGGSGGHIHFRLLSDSTIQYEVYLRFGGLPTIDDRDYYYVNRTSASRSMFF 463

Query: 507 SLQNSTNSDMDLSIFYAKEGTWCFGVKH------PSDKSNSQTYMSISLQGCHKNCNQKG 560
           SL NS+   +D  I YA+EGTW FG++       P+    S T +S+SL+ C + C+  G
Sbjct: 464 SLYNSSKEMVDFYILYAREGTWSFGLRQLIDSNTPAASRGSPTLVSLSLERCPRGCSSYG 523

Query: 561 ACHSSIDESGLTFYSFCTCDRDHGGFDCNDELVSPNGHIWQSVFLIASNGAAILPAFWAL 620
            C  + D +GLT YSFC+CDR HGGFDC+ E+VS   HI QS+ LIASN AA+LPA+WAL
Sbjct: 524 QCRYAFDANGLTSYSFCSCDRTHGGFDCSIEIVSHQEHIVQSIALIASNAAALLPAYWAL 583

Query: 621 RQKAFAEWILYTSSGISSALYHSCDVGTWCILSFRVLQFLDFWLSFMAVVGTFIYMATID 680
           RQ+ + EW+L+TSSGISSALYH+CDVGTWC+LS+ VLQF+DFWLSFMAVVGTF+Y++T  
Sbjct: 584 RQREYPEWVLFTSSGISSALYHACDVGTWCVLSYNVLQFMDFWLSFMAVVGTFVYLSTAG 643

Query: 681 ETSKRAMHTAVFIXXXXXXXXXXXRSANXXXXXXXXXXXXXXXXXXEFSTARRFVCWPWR 740
           E  KR +HT V I           R++N                  EF T  R  C    
Sbjct: 644 EAVKRTIHTVVAILTALLALTQATRASNIIIVLAIGSLGLLIGFLVEFVTKYRSYCGSAG 703

Query: 741 INLNVPQSWPNLRSLFSNSLDLLNKRFRWFYLLLGFITLAFAGTSWKLESNRSYWVWHSL 800
            +LN+      ++  FSN +  L KRFRW ++  G +    A  S+K+E++ SYW+WHS+
Sbjct: 704 FSLNMLDRPRAVKEWFSNLIKTLKKRFRWGFVAAGLVAFTMAAISFKVETSSSYWMWHSI 763

Query: 801 WHITIYTSSFFFLCS 815
           WH TIYTSSFFFLCS
Sbjct: 764 WHFTIYTSSFFFLCS 778



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,369,068
Number of extensions: 784847
Number of successful extensions: 1678
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1673
Number of HSP's successfully gapped: 2
Length of query: 859
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 752
Effective length of database: 8,173,057
Effective search space: 6146138864
Effective search space used: 6146138864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)