BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0422600 Os10g0422600|AK109893
(345 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268 86 2e-17
AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264 83 3e-16
AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345 81 8e-16
AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325 81 9e-16
AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163 58 6e-09
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 57 1e-08
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 57 1e-08
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 57 1e-08
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 56 4e-08
AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151 52 3e-07
AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127 52 3e-07
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 50 1e-06
AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249 50 2e-06
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 50 2e-06
>AT3G22550.1 | chr3:7991827-7992805 REVERSE LENGTH=268
Length = 267
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 248 DYTCVIARGANPRTTHIFDNRVVESSGDGEYFPPELWPPSAAGKXXXXXXXXFLRYCHGC 307
DYTCV G NPRT HIFDN +VES +F P FL C C
Sbjct: 172 DYTCVTCHGPNPRTIHIFDNCIVESQPGVVFF--RSSDPVNESDSDYSPPDSFLSCCCNC 229
Query: 308 SKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDE 340
K LG DIFMYRG++AFCS ECR EM+ E
Sbjct: 230 KKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSE 262
>AT3G63210.1 | chr3:23354019-23354906 REVERSE LENGTH=264
Length = 263
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 202 RLRVQTNYYAPCTEFGVKSGGAAVQYAXXXXXXXXXXXXXXXXXXXDYTCVIARGANPRT 261
+LRVQ A +FG K+G DYT VI+ G NP
Sbjct: 132 KLRVQIPSSA---DFGTKTGIRYPPCQLSPCVQTKVLAVSEIDQTEDYTRVISHGPNPTI 188
Query: 262 THIFDNRV-VESSGDGEYFPPELWPPSAAGKXXXXXXXXFLRYCHGCSKDLGLGKDIFMY 320
THIFDN V VE++ P P+ K FL C C K+L +DI++Y
Sbjct: 189 THIFDNSVFVEATPCSVPLPQ----PAMETKSTES----FLSRCFTCKKNLDQKQDIYIY 240
Query: 321 RGEKAFCSHECRYHEMLFDE 340
RGEK FCS ECRY EML D+
Sbjct: 241 RGEKGFCSSECRYQEMLLDQ 260
>AT5G11460.1 | chr5:3657064-3658388 REVERSE LENGTH=345
Length = 344
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 32/110 (29%)
Query: 248 DYTCVIARGANPRTTHIFDNRVVESSGDGEY---------------------FPPELWPP 286
DYTCVI+ G NP+TTH + ++V+ES E P ++ PP
Sbjct: 209 DYTCVISHGPNPKTTHFYGDQVMESVEREELKNRCCKNEKESIFAVAPLDLTTPVDVLPP 268
Query: 287 SAAGKXXXXXXXXFLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEM 336
FL +C+GCSK LG+G+DI+MY G KAFCS ECR E+
Sbjct: 269 K-----------DFLSFCYGCSKKLGMGEDIYMYSGYKAFCSSECRSKEI 307
>AT2G25690.1 | chr2:10940530-10941649 REVERSE LENGTH=325
Length = 324
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 57/105 (54%), Gaps = 29/105 (27%)
Query: 248 DYTCVIARGANPRTTHIFDNRVVES-----SGD-------GEYFPPELWPPSAAGKXXXX 295
DYTC+IA G NP+TTHI+ +RV+E GD G FP +
Sbjct: 219 DYTCIIAHGPNPKTTHIYGDRVLECHKNELKGDEDNKEKFGSVFPSD------------- 265
Query: 296 XXXXFLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDE 340
FL C+ C+K LG G DI+MYR EK+FCS ECR EM+ DE
Sbjct: 266 ---NFLGICNFCNKKLGGGDDIYMYR-EKSFCSEECRSEEMMIDE 306
>AT1G78020.1 | chr1:29338787-29339491 FORWARD LENGTH=163
Length = 162
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIEE 344
FLR C C + L G+DI+MYRG+KAFCS ECR +M DE E+
Sbjct: 89 FLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDERKEK 133
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 30/44 (68%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIE 343
FL C C K LGL DIFMYRG+KAFCS+ECR ++ DE E
Sbjct: 16 FLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKE 59
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIE 343
FL+ CH C+K L KD++MYRG+ FCS ECR +ML D+ E
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIE 343
FL+ CH C+K L KD++MYRG+ FCS ECR +ML D+ E
Sbjct: 42 FLKTCHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLIDDRKE 85
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIEE 344
FLR C C + L G+DI+MYRG++AFCS ECR ++ DE E+
Sbjct: 78 FLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKEK 122
>AT5G49120.1 | chr5:19908800-19909332 REVERSE LENGTH=151
Length = 150
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDE 340
FL +C C + L KDI+MY+G++AFCS ECR +M+ DE
Sbjct: 68 FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDE 108
>AT4G39795.1 | chr4:18466621-18467325 FORWARD LENGTH=127
Length = 126
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEG 341
FL C C + L G+DI+MY+G+ AFCS ECR +M DEG
Sbjct: 73 FLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDEG 114
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIEE 344
FL C C K LG +DIFMYRG+ FCS ECR ++ DE E+
Sbjct: 76 FLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKEK 120
>AT5G20700.1 | chr5:7006178-7007003 REVERSE LENGTH=249
Length = 248
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIE 343
FL C+ C K L G+DIF+YRGEKAFCS ECR + DE E
Sbjct: 182 FLNSCYLCRKKLH-GQDIFIYRGEKAFCSTECRSSHIANDERKE 224
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 300 FLRYCHGCSKDLGLGKDIFMYRGEKAFCSHECRYHEMLFDEGIEE 344
FL C C K LG +DI+MYRG+ FCS ECR ++ DE E+
Sbjct: 97 FLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEK 141
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,557,039
Number of extensions: 168952
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 14
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)