BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0415600 Os10g0415600|AK070876
(775 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14570.1 | chr4:8362586-8366525 FORWARD LENGTH=765 852 0.0
AT5G36210.1 | chr5:14248202-14253272 REVERSE LENGTH=731 82 9e-16
AT2G47390.1 | chr2:19442278-19446253 REVERSE LENGTH=962 62 1e-09
AT5G24260.1 | chr5:8234865-8237810 REVERSE LENGTH=747 53 5e-07
>AT4G14570.1 | chr4:8362586-8366525 FORWARD LENGTH=765
Length = 764
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/776 (56%), Positives = 561/776 (72%), Gaps = 26/776 (3%)
Query: 6 ASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQ 65
+S + K L +G+D + +EYA+QSKLLQEF+ IP+I AWIFNS ++ S+A+ ++ Q
Sbjct: 3 SSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNS--DSGSQAMFALSQ 60
Query: 66 TDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDD 125
+LLANKK+ F+L+ HIS S+ SV+F W+PFPIEM+G SA +PSPSG KLL+IRN E++
Sbjct: 61 ANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPENE 120
Query: 126 SPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFN 185
SPTK E+W QLE E HI Q VHGS+YVD WFEGISW+ +ET VAYVAEEP +PKP F+
Sbjct: 121 SPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPTFD 180
Query: 186 DSGY-KKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTL 244
GY KK S +K SWKG+GDWEE WGE Y+ KR PALFV+N+ SGEV +KGIPR++
Sbjct: 181 HLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPRSI 240
Query: 245 SVGQVIWAPSSSHS---LVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEAD 301
SVGQV+W+P+S+ S LVF W D RK GIKYC+NRPCA+YA+ E D
Sbjct: 241 SVGQVVWSPNSNGSAQYLVFAGWLGDK------RKFGIKYCYNRPCAIYAIKFTSDEPKD 294
Query: 302 KPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKID 361
P LT +SS F PRFS DGK+LVF+SAK+A+DSG H AT S+H+ID
Sbjct: 295 ------DDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRID 348
Query: 362 WPADGKL-EGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI 420
WP+DGKL E ++ DV+ +V CP+DGCFPGLY +G+L +PWL+DG +++LS+ W S VI
Sbjct: 349 WPSDGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVI 408
Query: 421 LXXXXXXXXXXXXXPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW 480
L P DSDYSWN LALD D+I+AVSSS ++VP+I YG + + W
Sbjct: 409 LSVNLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSW 468
Query: 481 EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATR 540
W I +P S+K+ A L+ +F ILK+PIS+ S LA+GAK P EAI+VS S
Sbjct: 469 LWSNIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKEN 527
Query: 541 ----PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIG 596
P I VLHGGPH+V P S+S+++A+L S GY+ L++NYRGSLG+GE+ALQSLPG +G
Sbjct: 528 GKCDPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVG 587
Query: 597 SQDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNL 656
SQDV D L A+D I+ G+ D S++ V+GGSHGGFLTTHLIGQAP FVAAAARNPVCN+
Sbjct: 588 SQDVKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNM 647
Query: 657 SLMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGA 716
+ MVG TDIP+WCF E YG + ++E PS +DL +FHQ SPISHISKV TPTLFLLG
Sbjct: 648 ASMVGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGT 705
Query: 717 QDLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKH 772
+DLRVP+SNG QY R LKE GVE K++VFP D H LD+PQ+D+ESFLNI VWF K+
Sbjct: 706 KDLRVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKY 761
>AT5G36210.1 | chr5:14248202-14253272 REVERSE LENGTH=731
Length = 730
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 22/221 (9%)
Query: 541 PTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGSQDV 600
P +V HGGP S + ++ + S+G+ + VNY GS G+G E + L G DV
Sbjct: 493 PLLVKSHGGPTAESRGSLNLNIQYWTSRGWAFVDVNYGGSTGYGREYRERLLRQWGIVDV 552
Query: 601 NDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLSLMV 660
+D +++ G D ++ + GGS GG+ T + F A A+ V +L ++
Sbjct: 553 DDCCGCAKYLVSSGKADVKRLCISGGSAGGYTTLASLAFR-DVFKAGASLYGVADLKML- 610
Query: 661 GTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLC----QFHQKSPISHISKVSTPTLFLLGA 716
+EG S Y D+L F+++SPI+ + K S P + G
Sbjct: 611 --------------KEEGHKFESRY--IDNLVGDEKDFYERSPINFVDKFSCPIILFQGL 654
Query: 717 QDLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQS 757
+D V + LK+ G+ ++ + + HG K ++
Sbjct: 655 EDKVVTPDQSRKIYEALKKKGLPVALVEYEGEQHGFRKAEN 695
>AT2G47390.1 | chr2:19442278-19446253 REVERSE LENGTH=962
Length = 961
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 27/181 (14%)
Query: 598 QDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLS 657
Q V A++ V+++G+ D SK+AV G S+G F+T +L+ AP F AR+ N +
Sbjct: 752 QLVASAEAAVEEVVRRGVADRSKIAVGGHSYGAFMTANLLAHAPHLFACGIARSGAYNRT 811
Query: 658 LM---VGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLL 714
L D W E N + E SP +K+ P L +
Sbjct: 812 LTPFGFQNEDRTLW--------EATNVYVEM------------SPFMSANKIKKPILLIH 851
Query: 715 GAQDLRVPVSNGLQYAR---TLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKK 771
G +D P + +Q R LK G +++V P + HG +S W +K
Sbjct: 852 GEED-NNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGYSARESIMHVLWETDRWLQK 910
Query: 772 H 772
+
Sbjct: 911 Y 911
>AT5G24260.1 | chr5:8234865-8237810 REVERSE LENGTH=747
Length = 746
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 542 TIVVLHGGP--HTVYPS---SYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIG 596
T++ ++GGP VY S + +L S+G + ++ RG+ G + + N G
Sbjct: 525 TMINVYGGPSVQLVYDSWINTVDMRTQYLRSRGILVWKLDNRGTARRGLKFESWMKHNCG 584
Query: 597 SQDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNL 656
D D +T ++I++GL + V G S+GG+L+ L+ + P F A + PV +
Sbjct: 585 YVDAEDQVTGAKWLIEQGLAKPDHIGVYGWSYGGYLSATLLTRYPEIFNCAVSGAPVTS- 643
Query: 657 SLMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLL-- 714
W + + E + P+ ++ ++ + S + H+ ++ +L
Sbjct: 644 -----------WDGYDSFYTEK---YMGLPTEEE--RYLKSSVMHHVGNLTDKQKLMLVH 687
Query: 715 GAQDLRVPVSNGLQYARTLKEMGVETKIIVFPEDMH 750
G D V + + L E G ++++FP++ H
Sbjct: 688 GMIDENVHFRHTARLVNALVEAGKRYELLIFPDERH 723
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,050,480
Number of extensions: 818435
Number of successful extensions: 1871
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 5
Length of query: 775
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 669
Effective length of database: 8,200,473
Effective search space: 5486116437
Effective search space used: 5486116437
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)