BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0411100 Os10g0411100|Os10g0411100
(216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06610.1 | chr5:2029953-2033620 FORWARD LENGTH=369 132 2e-31
AT3G19540.1 | chr3:6780762-6782633 FORWARD LENGTH=486 110 7e-25
AT1G49840.1 | chr1:18452243-18454157 FORWARD LENGTH=495 106 1e-23
AT1G27690.1 | chr1:9636681-9638307 FORWARD LENGTH=434 99 1e-21
AT1G79420.1 | chr1:29871537-29874166 FORWARD LENGTH=418 98 3e-21
AT5G05840.1 | chr5:1757268-1760458 REVERSE LENGTH=440 82 3e-16
AT1G75160.1 | chr1:28209534-28211624 FORWARD LENGTH=396 72 2e-13
AT5G66740.1 | chr5:26647114-26648558 FORWARD LENGTH=371 72 2e-13
AT3G55720.1 | chr3:20679893-20681338 FORWARD LENGTH=439 64 7e-11
>AT5G06610.1 | chr5:2029953-2033620 FORWARD LENGTH=369
Length = 368
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 64 PDLRVLLSVLACPLSPVPVLPR-HPRNVASSAQYILEQFRATTGCAKIEGAAKSMYAAGR 122
PD+++LLSV+ CPL PVP L + + V+SSAQYI++QF A TGC K+ G K+ + G+
Sbjct: 50 PDMKLLLSVMGCPLFPVPPLSKISLQQVSSSAQYIIQQFAAATGCKKLAGEIKNTFVTGK 109
Query: 123 VRMAMAPEPXXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEMAVAGHAVAAGCDGRVAWRR 182
+ M M + H+GCFV+WQ++P+ WL+E+ GH V+AG DG + WR
Sbjct: 110 ITMTMVSDINSSTAVSSASSVSHKGCFVMWQMLPEKWLIELVGGGHKVSAGSDGEITWRY 169
Query: 183 TPWLDAH 189
TPWL H
Sbjct: 170 TPWLGDH 176
>AT3G19540.1 | chr3:6780762-6782633 FORWARD LENGTH=486
Length = 485
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 65 DLRVLLSVLACPLSPVPVLPRHP------RNV---ASSAQYILEQFRATTGCAKIEGAAK 115
DLR+LL V+ PL+P+ V P +N SSAQYIL+Q+ A +G K++ + K
Sbjct: 129 DLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPIETSSAQYILQQYTAASGGQKLQNSIK 188
Query: 116 SMYAAGRVRMAMAP-EPXXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEMAVAGHAVAAGC 174
+ YA G+++M + E G FV+WQ+ PDMW VE+AV G V AGC
Sbjct: 189 NAYAMGKLKMITSELETATRTVRNRNPSKAETGGFVLWQMNPDMWYVELAVGGSKVRAGC 248
Query: 175 DGRVAWRRTPWLDAH 189
+G++ WR TPWL +H
Sbjct: 249 NGKLVWRHTPWLGSH 263
>AT1G49840.1 | chr1:18452243-18454157 FORWARD LENGTH=495
Length = 494
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 65 DLRVLLSVLACPLSPVPVLP---------RHPRNVASSAQYILEQFRATTGCAKIEGAAK 115
DLR+LL V+ PL+P+ V R SSAQYIL+Q+ A G K+ A K
Sbjct: 137 DLRLLLGVMGAPLAPINVSSSSHLLHLTIRDSPTETSSAQYILQQYTAACGGHKLHNAIK 196
Query: 116 SMYAAGRVRMAMAP-EPXXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEMAVAGHAVAAGC 174
+ YA G+++M + E G FV+WQ+ PDMW VE++V G V AGC
Sbjct: 197 NAYAMGKLKMITSELETPTGTVRNRNSTKSETGGFVLWQMNPDMWYVELSVGGSKVRAGC 256
Query: 175 DGRVAWRRTPWLDAH 189
+G++ WR TPWL +H
Sbjct: 257 NGKLVWRHTPWLGSH 271
>AT1G27690.1 | chr1:9636681-9638307 FORWARD LENGTH=434
Length = 433
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 65 DLRVLLSVLACPLSPVPV-----LPR-HPRNV---ASSAQYILEQFRATTGCAKIEGAAK 115
DLR+LL VL PL PV V LP +N SSAQYIL+Q+ A +G K+ + +
Sbjct: 101 DLRLLLGVLGAPLGPVHVSALDLLPHLSIKNTPMETSSAQYILQQYTAASGGQKLHSSVQ 160
Query: 116 SMYAAGRVRMAMAPE----PXXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEMAVAGHAVA 171
+ Y GR+R MA E G FV+W + PDMW +E+ + G V
Sbjct: 161 NGYVMGRIR-TMASEFETGSKGSKSKNNSSKAVESGGFVLWHMNPDMWYMELVLGGSKVL 219
Query: 172 AGCDGRVAWRRTPWLDAH 189
AGCDG++ WR TPWL H
Sbjct: 220 AGCDGKLVWRHTPWLGPH 237
>AT1G79420.1 | chr1:29871537-29874166 FORWARD LENGTH=418
Length = 417
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 21/146 (14%)
Query: 65 DLRVLLSVLACPLSPVPV-----LPRHP-------RNV---ASSAQYILEQFRATTGCAK 109
DLR+LL VL CPL+P+ V P P +NV S+A YI++Q+ A TGC K
Sbjct: 79 DLRLLLGVLGCPLAPISVVVSDLFPDDPLLGSFQIKNVPFETSTAHYIIQQYLAATGCLK 138
Query: 110 IEGAAKSMYAAGRVRMA------MAPEPXXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEM 163
AAK+MYA G ++M+ A + GCFV+WQ+ P MW +E+
Sbjct: 139 RAKAAKNMYATGIMKMSCCETEIAAGKSVKTLGGGGNGRSGDSGCFVLWQMQPGMWSLEL 198
Query: 164 AVAGHAVAAGCDGRVAWRRTPWLDAH 189
+ G + +G DG+ WR TPWL H
Sbjct: 199 VLGGTKLISGSDGKTVWRHTPWLGTH 224
>AT5G05840.1 | chr5:1757268-1760458 REVERSE LENGTH=440
Length = 439
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 63 SPDLRVLLSVLACPLSPVPVLPRHPRNVA--------------SSAQYILEQFRATTGCA 108
+ ++++LL V+ PL P+PV P H + S AQYI++Q+ A G
Sbjct: 67 NAEIQLLLGVVGAPLIPLPVQPDHHNDYENPIHKDIKDQPLEMSMAQYIVKQYIAAVGGD 126
Query: 109 KIEGAAKSMYAAGRVRMAMAP--------EPXXXXXXXXXXXXXHEGCFVVWQLVPDMWL 160
+ A +SMYA G+VRM + G FV+WQ ++W
Sbjct: 127 RALNAVESMYAMGKVRMTASEFCTGEGSLNSKMVKARSIKSGGGEVGGFVLWQKGIELWC 186
Query: 161 VEMAVAGHAVAAGCDGRVAWRRTPWLDAH 189
+E+ V+G ++AG D +VAWR+TPW +H
Sbjct: 187 LELVVSGCKISAGSDAKVAWRQTPWHPSH 215
>AT1G75160.1 | chr1:28209534-28211624 FORWARD LENGTH=396
Length = 395
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 61 RPSPDLRVLLSVLACPLSPVPV-----LPRHPRNV---ASSAQYILEQFRATTGCAKIEG 112
+ + LL ++ PL P V L R + AS+A+YI++Q+ A G
Sbjct: 79 KSDNEFVALLKIVGSPLIPFHVPLEFCLSRPINDTSIEASTAKYIVQQYVAACGGPTALN 138
Query: 113 AAKSMYAAGRVRMA----MAPEPXXXXXXXXXXXXXHE-GCFVVWQLVPDMWLVEMAVAG 167
A KSMYA G+VRM +A E E G FV+WQ P++W +E+ V+G
Sbjct: 139 AVKSMYAVGQVRMQGSEMVAGEDEGTGTPVRLGKGSFEVGGFVLWQKNPNLWFLELVVSG 198
Query: 168 HAVAAGCDGRVAWRRT 183
++AG DG+VAW ++
Sbjct: 199 FKISAGSDGKVAWNQS 214
>AT5G66740.1 | chr5:26647114-26648558 FORWARD LENGTH=371
Length = 370
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 65 DLRVLLSVLACPLSPVPVLPRHPRNV--------ASSAQYILEQFRATTGCAKIEGAAKS 116
+LR LL ++ PL P+ V H + AS+A+YI++Q+ A TG + A S
Sbjct: 64 ELRFLLYLVGSPLIPLQVQVGHSVHKPVKDCSIQASTAKYIVQQYIAATGGPQALNAVNS 123
Query: 117 MYAAGRVRMAMAPEPXXXXXXXXXXXXXHEGCFVVWQLVPDMWLVEMAVAGHAVAAGCDG 176
M G+V+M + G FV+WQ PD+W +E+ V+G V G +G
Sbjct: 124 MCVTGQVKMTASEFHQGDDSGVNLKSNDEMGGFVLWQKDPDLWCLELVVSGCKVICGSNG 183
Query: 177 RVAWRRT 183
R++WR +
Sbjct: 184 RLSWRHS 190
>AT3G55720.1 | chr3:20679893-20681338 FORWARD LENGTH=439
Length = 438
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 28/151 (18%)
Query: 66 LRVLLSVLACPLSPVPV-------------LPRHPRNVASSAQYILEQFRATTGCAKIEG 112
+++LL ++ P P+P+ L ++ ++ A+YI++Q+ A G
Sbjct: 66 IQMLLGIVGAPSIPLPISSDQAKIDHPISNLIKNQSIESAMAKYIVKQYTAAAGGEMALD 125
Query: 113 AAKSMYAAGRVRMAMAPEPXXXXXXXXXXXXX--------------HEGCFVVWQLVPDM 158
A +SMYA G+V+M + G FV+W+
Sbjct: 126 AVESMYAMGKVKMGVTEFCAAKTLNGKRKKKMVRIRNVNNNNGNGGEMGGFVLWKKGSSQ 185
Query: 159 WLVEMAVAGHAVAAGCDGRVAWRRTPWLDAH 189
W +E+ V+G V+AGCDG V WR++PWL AH
Sbjct: 186 WSLELVVSGCKVSAGCDGNVDWRQSPWL-AH 215
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.136 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,960,297
Number of extensions: 84434
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 9
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)