BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0410700 Os10g0410700|AK111981
(298 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06620.1 | chr5:2033780-2036143 FORWARD LENGTH=326 333 6e-92
AT2G17900.1 | chr2:7773420-7776675 REVERSE LENGTH=481 62 3e-10
AT2G19640.2 | chr2:8491401-8492597 FORWARD LENGTH=399 62 3e-10
AT3G21820.1 | chr3:7688629-7691444 REVERSE LENGTH=474 52 4e-07
>AT5G06620.1 | chr5:2033780-2036143 FORWARD LENGTH=326
Length = 325
Score = 333 bits (854), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/284 (56%), Positives = 201/284 (70%), Gaps = 1/284 (0%)
Query: 16 PPIRVALTESSGRGVFATRPISAGEVLHSAQPLVSHPSPPLIHEVCYSCLRRKXXXXXXX 75
PPIRV LTES+GR VFATR I AG+++H+A+P+V+ PS + VCY CL++
Sbjct: 42 PPIRVGLTESAGRAVFATRKIGAGDLIHTAKPVVACPSLLKLDSVCYLCLKKLMGSAKFE 101
Query: 76 XXXCYFCSDACREHAKGFHGVEKKADWSLFDDHCSSRGLKYPYMAKRLACMVISGAVSAD 135
+CS C+E++KGF VE +ADWS FDD+C + KYP M KRL CM+ISGA AD
Sbjct: 102 DRGVSYCSQECQENSKGFLDVETRADWSSFDDYCRTHNFKYPLMVKRLCCMIISGARPAD 161
Query: 136 CLDILQPARLHQGTLTEMEEEFALLDSTFRKAGFQEEITTFLTKEWYINVLARIRINAFR 195
CLDILQPA L ++++E+ + LL + FRKA F+++ FLTK+WY +LARIRINAFR
Sbjct: 162 CLDILQPAVLSSEMISKIEDGYGLLWNAFRKANFKDDDVAFLTKQWYTAILARIRINAFR 221
Query: 196 IELVASS-YENLLXXXXXXXXXXXXXGNAVYMLPSFYNHDCDPNTHIVWLASADARLKAL 254
I+LV S E+LL G+AVYMLPSFYNHDCDPN HI+WL +ADARL L
Sbjct: 222 IDLVGGSCGEDLLSLAAASVEGEGAVGHAVYMLPSFYNHDCDPNAHIIWLHNADARLNTL 281
Query: 255 RNIEEGEELRICYIDASMDVDARQRILAEGFGFECRCQRCLSGD 298
R++EEGEELRICYIDASM +ARQ IL++GFGF C C RC S D
Sbjct: 282 RDVEEGEELRICYIDASMGYEARQTILSQGFGFLCNCLRCQSTD 325
>AT2G17900.1 | chr2:7773420-7776675 REVERSE LENGTH=481
Length = 480
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 17/269 (6%)
Query: 27 GRGVFATRPISAGEVLHSAQPLVSHPSPPLIHEVCYSCLRRKXXXXXXXXXXCYFCSDAC 86
GR +F R GEV+ S +P + P+ C C + ++C +C
Sbjct: 22 GRSLFTARDFRPGEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSC 81
Query: 87 REHAKGFHGVEKKADWSLFDDHCSSRGLKYPYMAKRLACMVISGAVSADCLDILQPARLH 146
+K++W L D C + + ++ I V LQ ++
Sbjct: 82 -----------QKSEWKLHRDECKALT-RLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVL 129
Query: 147 QGTLTEMEEEFALLDSTFRKAGFQEEITTFLTKEWYINVLARIRINAFRIELVASSYENL 206
T T+ ++L+++ +E L + V ++ + + +A ++
Sbjct: 130 PITTTD---NYSLVEALVSHMSEIDEKQMLLYAQMANLVNLILQFPSVDLREIAENFSKF 186
Query: 207 -LXXXXXXXXXXXXXGNAVYMLPSFYNHDCDPNTHIVWLASADARLKALRNIEEGEELRI 265
G ++ L S NH C PN +V+ A ++A+ NI + E+ I
Sbjct: 187 SCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVF-EEQMAVVRAMDNISKDSEITI 245
Query: 266 CYIDASMDVDARQRILAEGFGFECRCQRC 294
YI+ + RQ+ L E + F C+C RC
Sbjct: 246 SYIETAGSTLTRQKSLKEQYLFHCQCARC 274
>AT2G19640.2 | chr2:8491401-8492597 FORWARD LENGTH=399
Length = 398
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 122/306 (39%), Gaps = 51/306 (16%)
Query: 18 IRVALTESSGRGVFATRPISAGEVLHSAQPLVSHPSPPL----IHEVCYSCLRRKXXXXX 73
+RVA GR + A + + AG+V+ PL+ + + P + C C R
Sbjct: 13 LRVAEIGGRGRSLVAAQSLRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAH 72
Query: 74 XXXXXCY---FCSDACR--------EHAKGFHGVEKKADWSLFDDHCSSRGLKYPYMAKR 122
C FCS C E + H ++ S F D S R ++ ++
Sbjct: 73 QKCQSCSLVSFCSPNCFASHTPWLCESLRRLH----QSSSSAFSDQPSDRQVQARFL--- 125
Query: 123 LACMVISGAVSADCLDILQPARLHQGTLTEMEEEFALLDSTFRKAGFQEEITTFLTKEWY 182
L+ ++ A +D +L L + + + DS AGF + + +
Sbjct: 126 LSAYNLAAASPSDFQILLS---LQGSGSSNGDPSCSAGDSA--AAGFLHSLLSSVCPSLP 180
Query: 183 INV--------LARIRINAFRIELVASSYENLLXXXXXXXXXXXXXGNAVYMLPSFYNHD 234
+++ L++ ++NAF L+ +Y SF+NHD
Sbjct: 181 VSISPDLTAALLSKDKVNAF----------GLMEPCSVSNEKRSVRAYGIYPKTSFFNHD 230
Query: 235 CDPNT-HIVWLASA-----DARLKALRNIEEGEELRICYIDASMDVDARQRILAEGFGFE 288
C PN ++ SA D ++ + ++ EG E+ + Y +M+ +RQ+ L E +GF+
Sbjct: 231 CLPNACRFDYVDSASDGNTDIIIRMIHDVPEGREVCLSYFPVNMNYSSRQKRLLEDYGFK 290
Query: 289 CRCQRC 294
C C RC
Sbjct: 291 CDCDRC 296
>AT3G21820.1 | chr3:7688629-7691444 REVERSE LENGTH=474
Length = 473
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 221 GNAVYMLPSFYNHDCDPNTHIVWLA---SADARLKALRNIEEGEELRICYIDASMDVDAR 277
G A + L S NH C PN A + ALR I + EE+ I YID + R
Sbjct: 391 GTAFFPLQSCMNHSCCPNAKAFKREEDRDGQAVIIALRRISKNEEVTISYIDEELPYKER 450
Query: 278 QRILAEGFGFECRCQRCL 295
Q +LA+ +GF C+C +CL
Sbjct: 451 QALLAD-YGFSCKCSKCL 467
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,150,681
Number of extensions: 227992
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 5
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)