BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0407500 Os10g0407500|Os10g0407500
(517 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07710.1 | chr5:2453310-2455357 FORWARD LENGTH=469 444 e-125
AT5G61390.1 | chr5:24678802-24680857 REVERSE LENGTH=488 417 e-117
AT1G74390.1 | chr1:27961760-27963826 REVERSE LENGTH=507 406 e-113
AT4G39810.1 | chr4:18474608-18475735 REVERSE LENGTH=256 227 1e-59
>AT5G07710.1 | chr5:2453310-2455357 FORWARD LENGTH=469
Length = 468
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 310/488 (63%), Gaps = 49/488 (10%)
Query: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
EIAFFDVET+VP+R GQ +A+LEFG+ILVCP++L + SY TLV+P DL ++S+ SVRCN
Sbjct: 8 EIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSVRCN 66
Query: 89 GITRXXXXXXXXXXXXXXXXYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
GI R Y +LH GR+WAGHNI+RFD ARIREAFAEIGR PPEP
Sbjct: 67 GIKRDDVVLAPLFADIADTVYDILH----GRIWAGHNILRFDCARIREAFAEIGRQPPEP 122
Query: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
KG ID+L LLTQKFGRRAGDMKMA+LA YFGLG Q+HRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 123 KGAIDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLE 182
Query: 209 ASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPDSSKRQRTISRVDNAIQAGGN 268
+SLP + + + SPE SS+R+ SR N +
Sbjct: 183 SSLP--------------YAHVDNSVSPETI---------SSRRRIDASREGNTVTTSVR 219
Query: 269 QQSI--DPATNKEPIELISNIEEMTLGSGIQID----------------ASSSGFSGFLE 310
SI + A +P + EM + IQ D ++S GFL
Sbjct: 220 LPSISENSAAQPDPFNMSVLRNEMASDNHIQSDILMEEEQIEPSDVVASENTSDHEGFLT 279
Query: 311 PDDVSTESIQISVPSSYRLTRKTSIK--HKGSPIQLCCAGLRIQFGVSTKFLDSAGRPKL 368
PD +S +I+ + Y ++ +K H SP+QL C+ L+I+FGV+ KFLD+ GR +L
Sbjct: 280 PDAMSLSNIKAMLFPFYPGSQMMKLKLLHGDSPLQLYCSYLKIRFGVNGKFLDNTGRRRL 339
Query: 369 NILVDIPENLSKILEFCDGIAQKSSQDSGSTSEWRPLIKKY-GYVNCPTVRLHIPTIVSG 427
N +VD+ +L ILE CD AQK S DSGSTSEW P++ G+VN P R+HI T ++G
Sbjct: 340 NFVVDLNPSLYSILEACDSNAQKLSVDSGSTSEWNPVVNPMKGFVNYPNARIHIATEING 399
Query: 428 EAATYGTEIYQKEASGNIQKLVFSKVDVAELDSWFVRGNMVDAFFSLELYDYEENAGIRL 487
+ A Y TEI+Q+E+SG QKL+FS + EL+S G++VDAF SLE YDY++ AGIRL
Sbjct: 400 DEARYATEIHQRESSGATQKLIFSNPNNEELESLLTTGSVVDAFLSLEPYDYQQKAGIRL 459
Query: 488 VAKKLVAK 495
VAKKLV +
Sbjct: 460 VAKKLVIQ 467
>AT5G61390.1 | chr5:24678802-24680857 REVERSE LENGTH=488
Length = 487
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/498 (45%), Positives = 308/498 (61%), Gaps = 60/498 (12%)
Query: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
EIAFFDVET++P R GQGYA+LEFG+ILVCP++LV + +Y+ LVRP +L +++ SV+CN
Sbjct: 15 EIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLITPRSVKCN 74
Query: 89 GITRXXXXXXXXXXXXXXXXYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
GI R Y +LH GR+WAGHNI++FD RIREAFAEIGR PPEP
Sbjct: 75 GIKREDVESALTFADIADTVYDILH----GRIWAGHNILKFDCPRIREAFAEIGRDPPEP 130
Query: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
KG ID+L LLTQ+FGRRAGDMKMA+LA YFGLG Q+HRSLDDVRMN EVLKYCATVLFLE
Sbjct: 131 KGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCATVLFLE 190
Query: 209 ASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPDSSKRQRTISRVDNAIQAGGN 268
+SLP + L+E ++T +PE SS+R+RTI + + +Q+ +
Sbjct: 191 SSLP-----DELIENSVT------TTTPET----------SSRRRRTIKK--SPLQSPTD 227
Query: 269 QQSIDPATNKEPIELISNIEEMT----------------LGSGIQIDASSSGFS------ 306
QQ+ + T + +S+ E T L S + ++ + S
Sbjct: 228 QQTGENMTTIPILSFVSSAEAQTDPFDMSTLRNEIAPEVLQSDVPMEEEQNQQSETVASE 287
Query: 307 ------GFLEPDDVSTESIQISVPSSY--RLTRKTSIKHKGSPIQLCCAGLRIQFGVSTK 358
GF+E D +S SI+ + Y T K + P+QL C L+++FG++ K
Sbjct: 288 GTGDQEGFMELDKISVSSIRATHVPLYDGSQTMKLQLFLGDRPLQLHCPRLKVRFGINGK 347
Query: 359 FLDSAGRPKLNILVDIPENLSKILEFCDGIAQKSSQDSGSTSEWRPL-IKKYGYVNCPTV 417
F+D AGR +LN ++D+ +L +L+ CD AQ S DSGS S+W PL I G++NCPT
Sbjct: 348 FMDKAGRRRLNFVIDLYPSLCNVLQECDSAAQTISVDSGSGSDWNPLVIPMKGFLNCPTA 407
Query: 418 RLHIPTIVSGEAATYGTEIYQKEASG--NIQKLVFSKVDVAELDSWFVRGNMVDAFFSLE 475
R+HIPT ++G+ Y EI+QKE SG QKL+ S E++S ++DAF SLE
Sbjct: 408 RIHIPTELNGDIDRYAAEIHQKEFSGATATQKLISSNPKAEEIESLLNPRTVLDAFLSLE 467
Query: 476 LYDYEENAGIRLVAKKLV 493
YDY++ AGIRLVA+KLV
Sbjct: 468 PYDYQQRAGIRLVARKLV 485
>AT1G74390.1 | chr1:27961760-27963826 REVERSE LENGTH=507
Length = 506
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/495 (46%), Positives = 308/495 (62%), Gaps = 35/495 (7%)
Query: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
EIAFFD+ET+VP ++G+ +A+LEFGAILVCPRRL + SY+TLVRP DL ++S + R +
Sbjct: 12 EIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTKRRS 71
Query: 89 GITRXXXXXXXXXXXXXXXXYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
GITR Y +LH GR+WAGHNI+RFD RIREAFAEIG PPEP
Sbjct: 72 GITRDGVLSAHTFSEIADKVYDILH----GRIWAGHNIIRFDCVRIREAFAEIGLSPPEP 127
Query: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
K ID+L LL+QKFG+RAGDMKMASLA YFGLG Q+HRSLDDVRMNLEV+KYCATVLFLE
Sbjct: 128 KATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLE 187
Query: 209 ASLPGVLT-VENLVERAITRSQANGAASPEVPKPVARSSPDSSKRQRTISRVDNAIQAGG 267
+S+P +LT + R R+++NG + + SS S K + S VD I
Sbjct: 188 SSVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSSSSVDATIVKNH 247
Query: 268 ---------NQQSIDPATNKEPIELISNIEEMTLGSGIQIDA------------------ 300
++ ++PI++ + I ++ +G+ +Q DA
Sbjct: 248 PIVSLLTECSESDASSYDIEDPIDITTLIGKLRIGT-LQTDAAEEAKTVRQQDESPPSPD 306
Query: 301 SSSGFSGFLEPDDVSTESIQISVPSSYRLTRKTSIKHKGSPIQLCCAGLRIQFGVSTKFL 360
S + FL ++VS SI+ S+ YR + + + H +P+ LC L+++FG+S KF+
Sbjct: 307 SDAKDESFLGVNEVSVSSIRASLVPFYRGSLRMKLFHNDTPLHLCWHSLKVRFGISRKFV 366
Query: 361 DSAGRPKLNILVDIPENLSKILEFCDGIAQKSSQDSGSTSEWRP-LIKKYGYVNCPTVRL 419
D AGRPKLNI+VD P +L KIL+ D A DS + S+WRP +I+K G+ N PT RL
Sbjct: 367 DHAGRPKLNIIVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKEGFANYPTARL 426
Query: 420 HIPTIVSGEAATYGTEIYQKEAS-GNIQKLVFSKVDVAELDSWFVRGNMVDAFFSLELYD 478
HI + +G+ GT++YQKE G QKL S ++ +L+S + G +VDAFFSLE Y
Sbjct: 427 HISSESNGDDTLCGTQVYQKEEPLGTNQKLDVSSDNLEKLESALLPGTLVDAFFSLEPYS 486
Query: 479 YEENAGIRLVAKKLV 493
Y++ AGIRL KKLV
Sbjct: 487 YQQMAGIRLAVKKLV 501
>AT4G39810.1 | chr4:18474608-18475735 REVERSE LENGTH=256
Length = 255
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/204 (56%), Positives = 148/204 (72%), Gaps = 5/204 (2%)
Query: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
EI FFD+ET+VP +AGQ + +LEFGAI+VCP++L + S+ TL++P DL VVS S R +
Sbjct: 9 EIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRSD 68
Query: 89 GITRXXXXXXXXXXXXXXXXYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
GITR + +L+ GR+WAGHNI RFD RI+EAFAEIG+ PEP
Sbjct: 69 GITRAKVTNAPSFEDVAEKIHGLLN----GRIWAGHNIRRFDCVRIKEAFAEIGKAAPEP 124
Query: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
G+ID+L LL+ KFG+RAG+MKMASLA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLE
Sbjct: 125 SGIIDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLE 184
Query: 209 ASLPGVLTVE-NLVERAITRSQAN 231
++LP L + + + +TRS+ N
Sbjct: 185 STLPNHLEGKWHTSSKIMTRSRRN 208
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,745,739
Number of extensions: 390057
Number of successful extensions: 1012
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 4
Length of query: 517
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 414
Effective length of database: 8,282,721
Effective search space: 3429046494
Effective search space used: 3429046494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)