BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0407400 Os10g0407400|J100026L13
         (109 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07710.1  | chr5:2453310-2455357 FORWARD LENGTH=469             74   2e-14
AT1G74390.1  | chr1:27961760-27963826 REVERSE LENGTH=507           60   3e-10
AT5G61390.1  | chr5:24678802-24680857 REVERSE LENGTH=488           58   9e-10

>AT5G07710.1 | chr5:2453310-2455357 FORWARD LENGTH=469
          Length = 468

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 49/70 (70%)

Query: 38  SGDDATYAIEIYLKEASGNIRKKDFSKADVAELEFMFFRGDMVDAFFSVELYNYKNNAGI 97
           +GD+A YA EI+ +E+SG  +K  FS  +  ELE +   G +VDAF S+E Y+Y+  AGI
Sbjct: 398 NGDEARYATEIHQRESSGATQKLIFSNPNNEELESLLTTGSVVDAFLSLEPYDYQQKAGI 457

Query: 98  RLVAKKLVVH 107
           RLVAKKLV+ 
Sbjct: 458 RLVAKKLVIQ 467



>AT1G74390.1 | chr1:27961760-27963826 REVERSE LENGTH=507
          Length = 506

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 38  SGDDATYAIEIYLKEAS-GNIRKKDFSKADVAELEFMFFRGDMVDAFFSVELYNYKNNAG 96
           +GDD     ++Y KE   G  +K D S  ++ +LE     G +VDAFFS+E Y+Y+  AG
Sbjct: 433 NGDDTLCGTQVYQKEEPLGTNQKLDVSSDNLEKLESALLPGTLVDAFFSLEPYSYQQMAG 492

Query: 97  IRLVAKKLVV 106
           IRL  KKLV+
Sbjct: 493 IRLAVKKLVI 502



>AT5G61390.1 | chr5:24678802-24680857 REVERSE LENGTH=488
          Length = 487

 Score = 58.2 bits (139), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 33  IPIIGSGDDATYAIEIYLKEASGNIRKKDF--SKADVAELEFMFFRGDMVDAFFSVELYN 90
           IP   +GD   YA EI+ KE SG    +    S     E+E +     ++DAF S+E Y+
Sbjct: 411 IPTELNGDIDRYAAEIHQKEFSGATATQKLISSNPKAEEIESLLNPRTVLDAFLSLEPYD 470

Query: 91  YKNNAGIRLVAKKLVVH 107
           Y+  AGIRLVA+KLV+H
Sbjct: 471 YQQRAGIRLVARKLVIH 487



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.143    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,305,684
Number of extensions: 84549
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 3
Length of query: 109
Length of database: 11,106,569
Length adjustment: 78
Effective length of query: 31
Effective length of database: 8,968,121
Effective search space: 278011751
Effective search space used: 278011751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)