BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0406200 Os10g0406200|Os10g0406200
(498 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14180.1 | chr1:4847828-4848970 FORWARD LENGTH=349 147 2e-35
AT5G18260.1 | chr5:6036226-6037295 REVERSE LENGTH=321 97 2e-20
AT1G75400.1 | chr1:28297609-28299464 FORWARD LENGTH=456 75 9e-14
AT4G39140.1 | chr4:18229637-18231282 REVERSE LENGTH=430 74 2e-13
AT1G19680.1 | chr1:6805909-6807682 FORWARD LENGTH=445 66 5e-11
AT2G21500.2 | chr2:9207965-9209575 REVERSE LENGTH=422 64 2e-10
>AT1G14180.1 | chr1:4847828-4848970 FORWARD LENGTH=349
Length = 348
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 134/257 (52%), Gaps = 41/257 (15%)
Query: 244 RNFPSRRSFLSKPIHPLSFPEHALEGQETDSPVANASTSSPMPSEFKAIGEIRPSGLMDY 303
RN SRR FLSKP+HP+ P + +DS A S SS PS ++ P ++D+
Sbjct: 111 RNSSSRRFFLSKPVHPILHPSDNVRDTASDSADA-CSWSSGTPSSIDSVDV--PEPVLDW 167
Query: 304 AYASGSHGESANWSAASSMDLTDLSERHDAERSGPLRSNNIMDRTRCDLCERLLSKRSPW 363
++ A AASS +C LC R LS++SPW
Sbjct: 168 ----NNNSTKAQQVAASST-------------------------FKCGLCNRYLSQKSPW 198
Query: 364 GSRRIVRTGDLPVAGVLPCCHVYHAECLERTTPKGQKHDPPCPACDRLSGKDTEQWSICR 423
GSR IVR D+PV GVL C HV+H ECL+++TPK Q++DP CP C + G+ +
Sbjct: 199 GSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICTKQEGEHFKS----- 253
Query: 424 LRNGFPRLRSLGE-GP-SRVWSCAQAGDCVAGAVQIPRASSISLLSRSGHKRHHAASKGE 481
N PRL+ L E GP SR W CAQAGDCV AV +P +++ +++R+ R + +G
Sbjct: 254 -NNIVPRLKPLYEDGPSSRPWGCAQAGDCVESAVNVPPKNTMMMINRN-RIRKSLSLRGN 311
Query: 482 SGKDWAETSSSSRTACM 498
S KD++ S + M
Sbjct: 312 SSKDFSRKMKRSNSVAM 328
>AT5G18260.1 | chr5:6036226-6037295 REVERSE LENGTH=321
Length = 320
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 298 SGLMDYAYASGSHGESANWSAASSMD-LTDLSERHDAERSGPLRSNNIMDRTRCDLCERL 356
S +M GS E +SS D L D+ +D E + P M RC +C++L
Sbjct: 139 SIMMSTRNHQGSPVEEEVSPNSSSNDMLLDVERSNDTEVANPRSEQGSMTHQRCGICKKL 198
Query: 357 LSKRSPWGSRRIVRTGDLPVAGVLPCCHVYHAECLERTTPKGQKHDPPCPACDRLSG 413
LS++SPW S +I+R+ D+P GV PC HVYH ECL++ TP Q DP CP C G
Sbjct: 199 LSQKSPWSSYKILRSRDMPATGVFPCHHVYHVECLDKATPTAQTRDPSCPVCSNTIG 255
>AT1G75400.1 | chr1:28297609-28299464 FORWARD LENGTH=456
Length = 455
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 39/187 (20%)
Query: 243 PRNFPSRRSFLSKPIHPLSFPEHALEGQETDSPVANASTSSPMPSEFKAIGEIRPSGLM- 301
P++ PSRR+ S P H L Q +DS + + P +I E R S ++
Sbjct: 165 PKSTPSRRARRS--------PGHQLFRQVSDSQILGLKS----PINNYSISEGRSSFVLS 212
Query: 302 ----DYAYASGSHGESANWSAASSMDLTDLSER----HDAERSGPLRSN----------- 342
D+A S WS + +L S+R D+E G R
Sbjct: 213 TCSNDFATGSQYASSEGGWSMNTFSELVAYSQRDRWSFDSEHLGSGRRKLSGGSSRFSFS 272
Query: 343 -NIMDRTRCDLCERLLSKRSPWGSRRIVRTGDLPVAGVLPCCHVYHAECLERTTPKGQKH 401
+++D+ C C +LL++RS + T +LP+A VL C HVYHAECLE T +K+
Sbjct: 273 PSVVDQQVCGACSKLLTERSS------IATFELPIAAVLACGHVYHAECLETMTTDIEKY 326
Query: 402 DPPCPAC 408
DP CP C
Sbjct: 327 DPACPIC 333
>AT4G39140.1 | chr4:18229637-18231282 REVERSE LENGTH=430
Length = 429
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 350 CDLCERLLSKRSPWGSRRIVRTGDLPVAGVLPCCHVYHAECLERTTPKGQKHDPPCPAC 408
C C R LS++S W S++I T +L V+ +L C HVYH ECLE+ TP+ K DP CP C
Sbjct: 260 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPIC 318
>AT1G19680.1 | chr1:6805909-6807682 FORWARD LENGTH=445
Length = 444
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 345 MDRTRCDLCERLLSKRSPWGSRRIVRTGDLPVAGVLPCCHVYHAECLERTTPKGQKHDPP 404
+D+ C C +LL++RSP V DLP+ VL C HVYHA CLE T + +K+DP
Sbjct: 268 VDQQTCGRCSKLLTERSP------VARFDLPIPAVLACGHVYHAACLETMTNETEKYDPT 321
Query: 405 CPAC 408
CP C
Sbjct: 322 CPIC 325
>AT2G21500.2 | chr2:9207965-9209575 REVERSE LENGTH=422
Length = 421
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 308 GSHGESANWSAASSMDLTDLSER----HDAERSGPLRSNNI--------MDRTRCDLCER 355
G+ +S WS + ++ S R +D E G LR + I D+ C C R
Sbjct: 198 GNESQSDGWSMQAFSEMMAYSRRESCSYDNECFG-LRRDKIDNLGSRKSNDQQNCGACSR 256
Query: 356 LLSKRSPWGSRRIVRTGDLPVAGVLPCCHVYHAECLERTTPKGQKHDPPCPAC 408
LS++S S++I T +L VA +L C HVYH+ECLE+ TP+ K DP CP C
Sbjct: 257 SLSEKSLLSSQKIFATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPIC 309
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,543,513
Number of extensions: 495536
Number of successful extensions: 1484
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1483
Number of HSP's successfully gapped: 6
Length of query: 498
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 395
Effective length of database: 8,282,721
Effective search space: 3271674795
Effective search space used: 3271674795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)