BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0406100 Os10g0406100|AK072672
(204 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213 370 e-103
AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217 365 e-101
AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217 362 e-101
AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217 348 1e-96
AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219 316 5e-87
AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301 78 4e-15
>AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213
Length = 212
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 171/201 (85%), Positives = 191/201 (95%)
Query: 4 EKKTPCLNERILSSLSKRSVAAHSWHDLEIGPGAPQVFNVVVEITKGSKVKYELDKKTGM 63
++ P LNERILSSLS+RSVAAH WHDLEIGPGAPQ+FNVVVEITKGSKVKYELDKKTG+
Sbjct: 12 QRPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKKTGL 71
Query: 64 IKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEPVIPGCYLRAKAIGLMPMIDQ 123
IKVDR+LYSSVVYPHNYGF+PRTLCED DP+DVLV+MQEPV+PGC+LRA+AIGLMPMIDQ
Sbjct: 72 IKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQ 131
Query: 124 GEKDDKIIAVCVDDPEFRHFNDLKELSPHRLAEIRRFFEDYKKNENKEVAVNDFLPPATA 183
GEKDDKIIAVCVDDPE++H+ D+KEL PHRL+EIRRFFEDYKKNENKEVAVNDFLP +A
Sbjct: 132 GEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDYKKNENKEVAVNDFLPSESA 191
Query: 184 QEAIKYSMDLYAEYILHSLRR 204
EAI+YSMDLYAEYILH+LRR
Sbjct: 192 VEAIQYSMDLYAEYILHTLRR 212
>AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217
Length = 216
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/200 (84%), Positives = 187/200 (93%)
Query: 5 KKTPCLNERILSSLSKRSVAAHSWHDLEIGPGAPQVFNVVVEITKGSKVKYELDKKTGMI 64
+ P LNERILS+LS+RSVAAH WHDLEIGP AP VFNVVVEITKGSKVKYELDKKTG+I
Sbjct: 17 RPVPKLNERILSTLSRRSVAAHPWHDLEIGPEAPLVFNVVVEITKGSKVKYELDKKTGLI 76
Query: 65 KVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEPVIPGCYLRAKAIGLMPMIDQG 124
KVDR+LYSSVVYPHNYGFIPRTLCED DP+DVLVLMQEPV+PGC+LRA+AIGLMPMIDQG
Sbjct: 77 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQG 136
Query: 125 EKDDKIIAVCVDDPEFRHFNDLKELSPHRLAEIRRFFEDYKKNENKEVAVNDFLPPATAQ 184
EKDDKIIAVC DDPE++HF D+K+L+PHRL EIRRFFEDYKKNENK+VAVNDFLP +A
Sbjct: 137 EKDDKIIAVCADDPEYKHFTDIKQLAPHRLQEIRRFFEDYKKNENKKVAVNDFLPSESAH 196
Query: 185 EAIKYSMDLYAEYILHSLRR 204
EAI+YSMDLYAEYILH+LRR
Sbjct: 197 EAIQYSMDLYAEYILHTLRR 216
>AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217
Length = 216
Score = 362 bits (929), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/201 (83%), Positives = 187/201 (93%)
Query: 4 EKKTPCLNERILSSLSKRSVAAHSWHDLEIGPGAPQVFNVVVEITKGSKVKYELDKKTGM 63
+ TP LNERILSSLSKRSVAAH WHDLEIGPGAP +FNVV+EI+KGSKVKYELDKKTG+
Sbjct: 16 QNPTPRLNERILSSLSKRSVAAHPWHDLEIGPGAPVIFNVVIEISKGSKVKYELDKKTGL 75
Query: 64 IKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEPVIPGCYLRAKAIGLMPMIDQ 123
IKVDR+LYSSVVYPHNYGF+PRTLCED DP+DVLV+MQEPV+PGC+LRA+AIGLMPMIDQ
Sbjct: 76 IKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQ 135
Query: 124 GEKDDKIIAVCVDDPEFRHFNDLKELSPHRLAEIRRFFEDYKKNENKEVAVNDFLPPATA 183
GEKDDKIIAVCVDDPE++H ++ EL PHRL+EIRRFFEDYKKNENKEVAVNDFL P A
Sbjct: 136 GEKDDKIIAVCVDDPEYKHITNINELPPHRLSEIRRFFEDYKKNENKEVAVNDFLQPGPA 195
Query: 184 QEAIKYSMDLYAEYILHSLRR 204
EAI+YSMDLYAEYILH+LRR
Sbjct: 196 IEAIQYSMDLYAEYILHTLRR 216
>AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217
Length = 216
Score = 348 bits (893), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 161/197 (81%), Positives = 180/197 (91%)
Query: 8 PCLNERILSSLSKRSVAAHSWHDLEIGPGAPQVFNVVVEITKGSKVKYELDKKTGMIKVD 67
P LNERILSS+S RSVAAH WHDLEIGP AP +FN VVEI KGSKVKYELDK TG+IKVD
Sbjct: 20 PTLNERILSSMSHRSVAAHPWHDLEIGPEAPIIFNCVVEIGKGSKVKYELDKTTGLIKVD 79
Query: 68 RVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEPVIPGCYLRAKAIGLMPMIDQGEKD 127
R+LYSSVVYPHNYGFIPRTLCED DP+DVLV+MQEPVIPGC+LRAKAIGLMPMIDQGEKD
Sbjct: 80 RILYSSVVYPHNYGFIPRTLCEDSDPIDVLVIMQEPVIPGCFLRAKAIGLMPMIDQGEKD 139
Query: 128 DKIIAVCVDDPEFRHFNDLKELSPHRLAEIRRFFEDYKKNENKEVAVNDFLPPATAQEAI 187
DKIIAVC DDPE+RH+ND+ EL PHR+AEIRRFFEDYKKNENKEVAVNDFLP A +A+
Sbjct: 140 DKIIAVCADDPEYRHYNDISELPPHRMAEIRRFFEDYKKNENKEVAVNDFLPATAAYDAV 199
Query: 188 KYSMDLYAEYILHSLRR 204
++SMDLYA+Y++ +LRR
Sbjct: 200 QHSMDLYADYVVENLRR 216
>AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219
Length = 218
Score = 316 bits (810), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 150/196 (76%), Positives = 166/196 (84%)
Query: 9 CLNERILSSLSKRSVAAHSWHDLEIGPGAPQVFNVVVEITKGSKVKYELDKKTGMIKVDR 68
LNER ++ + RS AAH WHDLEIGP AP VFN VVEI+KG KVKYELDK +G+IKVDR
Sbjct: 23 TLNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKGGKVKYELDKNSGLIKVDR 82
Query: 69 VLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEPVIPGCYLRAKAIGLMPMIDQGEKDD 128
VLYSS+VYPHNYGFIPRT+CED DPMDVLVLMQEPV+ G +LRA+AIGLMPMIDQGEKDD
Sbjct: 83 VLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQGEKDD 142
Query: 129 KIIAVCVDDPEFRHFNDLKELSPHRLAEIRRFFEDYKKNENKEVAVNDFLPPATAQEAIK 188
KIIAVC DDPEFRH+ D+KEL PHRLAEIRRFFEDYKKNENK+V V FLP A +AIK
Sbjct: 143 KIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFEDYKKNENKKVDVEAFLPAQAAIDAIK 202
Query: 189 YSMDLYAEYILHSLRR 204
SMDLYA YI L+R
Sbjct: 203 DSMDLYAAYIKAGLQR 218
>AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301
Length = 300
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 28/194 (14%)
Query: 1 MAEEKKTPCLNERILSSLSKRSVAAHSWHD--LEIGPGAPQVFNVVVEITKGSKVKYEL- 57
+ EE L+ R+ L WHD L +G G VFN +VEI K SK K E+
Sbjct: 67 VQEEGPAESLDYRVFF-LDGSGKKVSPWHDIPLTLGDG---VFNFIVEIPKESKAKMEVA 122
Query: 58 -DKKTGMIKVDRVLYSSVVYPHN----YGFIPRTLCE-------------DGDPMDVLVL 99
D+ IK D YP+N YG +P+T + D DP+DV+ +
Sbjct: 123 TDEDFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPSHANSEVEGCFGDNDPVDVVEI 182
Query: 100 MQEPVIPGCYLRAKAIGLMPMIDQGEKDDKIIAVCVDDPEFRHFNDLKELSPH---RLAE 156
+ G L+ K + + MID+GE D KI+A+ +DDP+ ND++++ H L
Sbjct: 183 GETQRKIGDILKIKPLAALAMIDEGELDWKIVAISLDDPKAHLVNDVEDVEKHFPGTLTA 242
Query: 157 IRRFFEDYKKNENK 170
IR +F DYK + K
Sbjct: 243 IRDWFRDYKIPDGK 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,693,989
Number of extensions: 199039
Number of successful extensions: 460
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 6
Length of query: 204
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 110
Effective length of database: 8,529,465
Effective search space: 938241150
Effective search space used: 938241150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)