BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0396300 Os10g0396300|AK120220
(216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45550.1 | chr5:18462284-18464840 FORWARD LENGTH=216 393 e-110
AT4G19045.1 | chr4:10438213-10439788 REVERSE LENGTH=216 384 e-107
AT5G20440.1 | chr5:6908646-6909996 FORWARD LENGTH=217 249 9e-67
AT5G20430.1 | chr5:6904705-6905391 FORWARD LENGTH=123 158 2e-39
>AT5G45550.1 | chr5:18462284-18464840 FORWARD LENGTH=216
Length = 215
Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/214 (85%), Positives = 201/214 (93%), Gaps = 1/214 (0%)
Query: 1 MSLFGLGSKNQKTFRPKKNAPSGNKGVQLKKHIDATLGSGNLRDAVRLPPGEDLNEWLAV 60
MSLFGLG +NQKTFRPKK+APSG+KG QL+KHIDATLGSGNLR+AVRLPPGED NEWLAV
Sbjct: 1 MSLFGLG-RNQKTFRPKKSAPSGSKGAQLRKHIDATLGSGNLREAVRLPPGEDANEWLAV 59
Query: 61 NTVDFFNQVNILYGTLMEFCTPTTCPTMSAGPKFEYRWADGIQIKKPIEVSAPKYVEYLM 120
NTVDFFNQVN+LYGTL EFCTP CPTM+AGPK+EYRWADG+QIKKPIEVSAPKYVEYLM
Sbjct: 60 NTVDFFNQVNLLYGTLTEFCTPDNCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLM 119
Query: 121 DWIEVQLDDESIFPQKLGTPFPQNFREVVKTIFKRLFRVYAHIYHTHFQKIVSLKEEAHL 180
DWIE QLDDE++FPQ+LG PFPQNF++VVKTIFKRLFRVYAHIYH+HFQKIVSLKEEAHL
Sbjct: 120 DWIETQLDDETLFPQRLGAPFPQNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHL 179
Query: 181 NTCFKHFTLFTWEFKLIDKAELAPLIDLIESIVS 214
NTCFKHF LFT EF LIDK ELAPL +LIESI+S
Sbjct: 180 NTCFKHFILFTHEFGLIDKKELAPLQELIESIIS 213
>AT4G19045.1 | chr4:10438213-10439788 REVERSE LENGTH=216
Length = 215
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/214 (84%), Positives = 198/214 (92%), Gaps = 1/214 (0%)
Query: 1 MSLFGLGSKNQKTFRPKKNAPSGNKGVQLKKHIDATLGSGNLRDAVRLPPGEDLNEWLAV 60
MSLFGLG +NQKTFRPKK+APSG KG +L+KHIDATLGSGNLR+AV+LPPGEDLNEWLAV
Sbjct: 1 MSLFGLG-RNQKTFRPKKSAPSGTKGAELRKHIDATLGSGNLREAVKLPPGEDLNEWLAV 59
Query: 61 NTVDFFNQVNILYGTLMEFCTPTTCPTMSAGPKFEYRWADGIQIKKPIEVSAPKYVEYLM 120
NTVDFFNQVN+L+GTL EFCTP C TM+AGPK+EYRWADG+QIKKPIEVSAPKYVEYLM
Sbjct: 60 NTVDFFNQVNLLFGTLTEFCTPENCSTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLM 119
Query: 121 DWIEVQLDDESIFPQKLGTPFPQNFREVVKTIFKRLFRVYAHIYHTHFQKIVSLKEEAHL 180
DWIE QLDDE+IFPQKLG FP NF+EVVKTIFKRLFRVYAHIYH+HFQKIVSLKEEAHL
Sbjct: 120 DWIETQLDDETIFPQKLGAAFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHL 179
Query: 181 NTCFKHFTLFTWEFKLIDKAELAPLIDLIESIVS 214
NTCFKHF LFT EF LIDK ELAPL +LIESI++
Sbjct: 180 NTCFKHFILFTHEFVLIDKKELAPLQELIESIIA 213
>AT5G20440.1 | chr5:6908646-6909996 FORWARD LENGTH=217
Length = 216
Score = 249 bits (635), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 112/184 (60%), Positives = 148/184 (80%), Gaps = 2/184 (1%)
Query: 31 KHIDATLGSGNLRDAVRLPPGEDLNEWLAVNTVDFFNQVNILYGTLMEFCTPTTCPTMSA 90
+ + + + S NLR+AVRLP G D+NEW A+NTVDFFNQ+++LY TL EFCT TTCP M+A
Sbjct: 32 RELISGIRSDNLREAVRLPQGVDINEWFAMNTVDFFNQISLLYATLEEFCTQTTCPVMNA 91
Query: 91 GPKFEYRWADGIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKLGTPFPQNFREVVK 150
G ++EYRWADG I KP VSAPKYVEYL+DW+E ++D+E+IFP+ G PFP NF + VK
Sbjct: 92 G-RYEYRWADGTTITKPKTVSAPKYVEYLIDWVETEIDNEAIFPKNPGEPFPPNFEDFVK 150
Query: 151 TIFKRLFRVYAHIYHTHFQKIVSLKEEAHLNTCFKHFTLFTWEFKLIDKA-ELAPLIDLI 209
I ++LFRVYAHIY++HF +IV+L E+AHLNTCFKHF LF EF+L+DK E+AP+ L+
Sbjct: 151 RILRKLFRVYAHIYYSHFHEIVALNEQAHLNTCFKHFLLFVSEFQLVDKEKEMAPIKSLV 210
Query: 210 ESIV 213
E+++
Sbjct: 211 ETML 214
>AT5G20430.1 | chr5:6904705-6905391 FORWARD LENGTH=123
Length = 122
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 96/126 (76%), Gaps = 6/126 (4%)
Query: 88 MSAGPKFEYRWADGIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKLGTPFPQNFRE 147
M AG ++EYRWADG + VSAP+YVE LM+WIE Q+D+E IFP+K G PFP NF +
Sbjct: 1 MKAG-RYEYRWADGTTM-----VSAPEYVELLMNWIETQIDNEHIFPKKTGEPFPPNFED 54
Query: 148 VVKTIFKRLFRVYAHIYHTHFQKIVSLKEEAHLNTCFKHFTLFTWEFKLIDKAELAPLID 207
VK I ++LFRVYAHIYH+HF KIV+L E+AHLNTCF + LF EF+L+DK E+ P+
Sbjct: 55 FVKRILRKLFRVYAHIYHSHFPKIVTLNEQAHLNTCFHRYLLFVSEFQLVDKEEMVPIQK 114
Query: 208 LIESIV 213
L+E+I+
Sbjct: 115 LVETIL 120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,955,425
Number of extensions: 206571
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 4
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)