BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0396100 Os10g0396100|AK064116
         (425 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23880.1  | chr3:8622061-8623155 REVERSE LENGTH=365             54   2e-07
AT3G06240.1  | chr3:1887336-1888619 FORWARD LENGTH=428             49   5e-06

>AT3G23880.1 | chr3:8622061-8623155 REVERSE LENGTH=365
          Length = 364

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 122/308 (39%), Gaps = 35/308 (11%)

Query: 11  LPDDLVADILTRLPARSVCRFRAVCRSWRALATERQFVLXXXXXXXXXXVPMNHHHRKVH 70
           LP +++ +IL RLP +S+ RF+ VC SWR+L +E  F L                  +  
Sbjct: 14  LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALIL------------ETS 61

Query: 71  XXXXXXXXXXXXXXTVMLAFVMICRRNEPDRSFYLESREDGAC------KLLGCWDGMMC 124
                         T        C  +  + S    S  DG        +++G   G++C
Sbjct: 62  KATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVC 121

Query: 125 IDVRRDSPACRDGIVVVNP-ISMAYAVVRSPMPDGGE-----FIAGYAHP-DTFAFHLMY 177
             V  D       + + NP I +   +  S +    +     +  GY    D +    + 
Sbjct: 122 FHVDYDK-----SLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALL 176

Query: 178 CCHNQGKVIFQVIKAGDSQWREIAADRLAISGIDFDKQGISSVALHGGLHWQLRTNSGQW 237
              +Q K+  ++       WR   ++    SG+    +  S + ++G L+W   ++S  W
Sbjct: 177 QQRHQVKIETKIYSTRQKLWR---SNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSW 233

Query: 238 VMLVYDMVTEKFRSIAAPQCA--ITWVRGLSVLSGRLCSIVIPESMTAEIWVLEDYHEHR 295
            ++ YDM  ++F+ +  P C     +   L  L G L  +   +   A++WV++++ E  
Sbjct: 234 TIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVY 293

Query: 296 SWHCIREI 303
           SW  +  I
Sbjct: 294 SWSKLLSI 301



>AT3G06240.1 | chr3:1887336-1888619 FORWARD LENGTH=428
          Length = 427

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 213 DKQGISSVALHGGLHWQL-RTNSGQWVMLVYDMVTEKFRSIAAPQCAITWVRGLS----- 266
           D    S V  +G +HW    +   Q V++ +D+ TE+FR +  P  A       S     
Sbjct: 262 DGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVG 321

Query: 267 VLSGRLCSIVIPESMTAEIWVLEDYHEHRSWHCIR 301
            L+GRLC +     +  +IWV+ +Y E +SW  IR
Sbjct: 322 SLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIR 356



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.137    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,474,032
Number of extensions: 319861
Number of successful extensions: 1200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1200
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)