BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0395500 Os10g0395500|J065077G13
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14710.1  | chr5:4746465-4747776 FORWARD LENGTH=125            100   3e-22

>AT5G14710.1 | chr5:4746465-4747776 FORWARD LENGTH=125
          Length = 124

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 60/73 (82%)

Query: 10  RKDESVFSDPTYNVSVLFGKRDEPLLLACARQLIEHISGSGSARSLMISLGLKDHSQATM 69
           RK+E +  +PT++VSV+FGKRDEP+L A AR+LIEHIS    ++ L++SLGLKDHS  T+
Sbjct: 52  RKEEGMSVEPTFSVSVIFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETL 111

Query: 70  KYIVSTIIENRLW 82
           K IV+T+IENRLW
Sbjct: 112 KEIVATVIENRLW 124



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,709,643
Number of extensions: 53231
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)