BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0394100 Os10g0394100|AK066208
         (310 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07010.3  | chr1:2152949-2154968 FORWARD LENGTH=401            236   1e-62
AT1G18480.1  | chr1:6361639-6362814 FORWARD LENGTH=392            118   4e-27

>AT1G07010.3 | chr1:2152949-2154968 FORWARD LENGTH=401
          Length = 400

 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 150/212 (70%), Gaps = 11/212 (5%)

Query: 71  ITVAGDPPTFVTAPGRRIVA---------VGDLHGDLNQTRAALVMAGLLSSES-DGHVW 120
           I + GDPPTFV+AP RRIVA         VGDLHGDL + R AL +AG+LSS+  D    
Sbjct: 42  IVINGDPPTFVSAPARRIVAGFGFGYALTVGDLHGDLGKARDALQLAGVLSSDGRDQWYL 101

Query: 121 TGGQTVLVQVGDILDRGEDEIAILSLLSSLNMQAKSQGGAVFQVNGNHETINVEGDYRYV 180
                  ++VGDILDRG+DEIAILSLL SL+ QAK+ GGAVFQVNGNHET+NVEGD+RYV
Sbjct: 102 LEFNITHLEVGDILDRGDDEIAILSLLRSLDDQAKANGGAVFQVNGNHETMNVEGDFRYV 161

Query: 181 DPGAFDECIRFMEYLDECDGNWDDAFLNWVNVCERWKEEYPMSPNGDWRPWNFVKKQKGI 240
           D  AFDEC  F++YL++   +WD AF NW+    +WKE+   S    W  WN VK+QKG+
Sbjct: 162 DARAFDECTDFLDYLEDYAQDWDKAFRNWIFESRQWKEDR-RSSQTYWDQWNVVKRQKGV 220

Query: 241 AARSSLFKRGGPLACELARHPVVLSVNDWIFC 272
            ARS L + GG LACEL+RH V+L VN+W+FC
Sbjct: 221 IARSVLLRPGGRLACELSRHGVILRVNNWLFC 252



>AT1G18480.1 | chr1:6361639-6362814 FORWARD LENGTH=392
          Length = 391

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 104/187 (55%), Gaps = 13/187 (6%)

Query: 87  RIVAVGDLHGDLNQTRAALVMAGLLSSESDGHVWTGGQTVLVQVGDILDRGEDEIAILSL 146
           R+VA+GDLHGDL ++R A  +AGL+ S      WTGG T++VQVGD+LDRG +E+ IL  
Sbjct: 55  RLVAIGDLHGDLEKSREAFKIAGLIDSSDR---WTGGSTMVVQVGDVLDRGGEELKILYF 111

Query: 147 LSSLNMQAKSQGGAVFQVNGNHETINVEGDYRYVDPGAFDECIRFMEYLD-ECDGNWDDA 205
           L  L  +A+  GG +  +NGNHE +N+EGD+RYV     +E   F  + D  C GN    
Sbjct: 112 LEKLKREAERAGGKILTMNGNHEIMNIEGDFRYVTKKGLEE---FQIWADWYCLGNKMKT 168

Query: 206 FLNWVNVCERWKEEYPMSPNGDWRPWNFVKKQKGIAARSSLFKRGGPLACE-LARHPVVL 264
             + ++  +   E  PMS      P       +GI AR +  +  GP+A   L ++  V 
Sbjct: 169 LCSGLDKPKDPYEGIPMS-----FPRMRADCFEGIRARIAALRPDGPIAKRFLTKNQTVA 223

Query: 265 SVNDWIF 271
            V D +F
Sbjct: 224 VVGDSVF 230



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,819,949
Number of extensions: 224551
Number of successful extensions: 486
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 212
Effective length of database: 8,419,801
Effective search space: 1784997812
Effective search space used: 1784997812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)