BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0387000 Os10g0387000|AK099943
(425 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38670.1 | chr2:16168979-16171680 FORWARD LENGTH=422 505 e-143
AT2G32260.1 | chr2:13697645-13700241 FORWARD LENGTH=333 119 3e-27
AT4G15130.1 | chr4:8637793-8639388 FORWARD LENGTH=305 113 2e-25
>AT2G38670.1 | chr2:16168979-16171680 FORWARD LENGTH=422
Length = 421
Score = 505 bits (1300), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/364 (66%), Positives = 291/364 (79%), Gaps = 12/364 (3%)
Query: 74 YMDGCFDLMHYGHANALRQAKLLGDQLVVGVVSDEEIVANKGPPVLSMEERLTLVSGLKW 133
YMDGCFD+MHYGH NALRQA+ LGDQLVVGVVSDEEI+ANKGPPV + ER+T+V +KW
Sbjct: 58 YMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKGPPVTPLHERMTMVKAVKW 117
Query: 134 VDEVIPNAPYEITEEFMNTLFNKYNIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT 193
VDEVI +APY ITE+FM LF++Y IDYIIHGDDPC+LPDGTDAYALAKK GRYKQIKRT
Sbjct: 118 VDEVISDAPYAITEDFMKKLFDEYQIDYIIHGDDPCVLPDGTDAYALAKKAGRYKQIKRT 177
Query: 194 EGVSSTDIVGRILLTFKQKEAGSMETTTDANQ--NTGATCDKVK-------SQLSNFLPT 244
EGVSSTDIVGR+LL +++ + + + + G + K + +++S+FLPT
Sbjct: 178 EGVSSTDIVGRMLLCVRERSISDTHSRSSLQRQFSHGHSSPKFEDGASSAGTRVSHFLPT 237
Query: 245 SRRIMQFSNGQAPSPGARVVYIDGAFDLFHAGHVEILRSARQLGDFLLVGVHDDQAIRDR 304
SRRI+QFSNG+ P P AR++YIDGAFDLFHAGHVEILR AR+LGDFLLVG+H+DQ + +
Sbjct: 238 SRRIVQFSNGKGPGPDARIIYIDGAFDLFHAGHVEILRRARELGDFLLVGIHNDQTVSAK 297
Query: 305 RG-YRPIMHLHERTLSVLACRYVDEVIIGAPWEVSRDMITTFNISLVVHGTVTEGSSVVG 363
RG +RPIM+LHER+LSVLACRYVDEVIIGAPWEVSRD ITTF+ISLVVHGTV E
Sbjct: 298 RGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVSRDTITTFDISLVVHGTVAESDDFRK 357
Query: 364 IDS--YAVPKSMGIFQTITSTKPITTVSVATRIIDNHEAYKKRNLKKKASEDRYYTQKKF 421
+ Y+VP SMGIFQ + S ITT ++ RI+ NHEAY+KRN KK+ASE +YY QK F
Sbjct: 358 EEDNPYSVPISMGIFQVLDSPLDITTSTIIRRIVANHEAYQKRNAKKEASEKKYYEQKSF 417
Query: 422 VSGD 425
VSGD
Sbjct: 418 VSGD 421
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 264 VYIDGAFDLFHAGHVEILRSARQLGDFLLVGVHDDQAIRDRRGYRPIMHLHERTLSVLAC 323
VY+DG FD+ H GH LR AR LGD L+VGV D+ I +G P+ LHER V A
Sbjct: 57 VYMDGCFDMMHYGHCNALRQARALGDQLVVGVVSDEEIIANKG-PPVTPLHERMTMVKAV 115
Query: 324 RYVDEVIIGAPWEVSRD----MITTFNISLVVHGTVTEGSSVV--GIDSYAVPKSMGIFQ 377
++VDEVI AP+ ++ D + + I ++HG + V+ G D+YA+ K G ++
Sbjct: 116 KWVDEVISDAPYAITEDFMKKLFDEYQIDYIIHG---DDPCVLPDGTDAYALAKKAGRYK 172
Query: 378 TITSTKPITTVSVATRIIDNHEAYKKRNLKKKASEDRYYTQKKFVSG 424
I T+ +++ + R++ ++R++ S R Q++F G
Sbjct: 173 QIKRTEGVSSTDIVGRML---LCVRERSISDTHS--RSSLQRQFSHG 214
>AT2G32260.1 | chr2:13697645-13700241 FORWARD LENGTH=333
Length = 332
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 9/143 (6%)
Query: 74 YMDGCFDLMHYGHANALRQAKLL---GDQLVVGVVSDEEIVANKGPPVLSMEERLTLVSG 130
Y DG +DL H+GHA +L QAKL L+VG +DE KG V++ EER +
Sbjct: 38 YADGIYDLFHFGHARSLEQAKLAFPNNTYLLVGCCNDETTHKYKGRTVMTAEERYESLRH 97
Query: 131 LKWVDEVIPNAPYEITEEFMNTLFNKYNIDYIIHGDDPCLLPDGT--DAYALAKKVGRYK 188
KWVDEVIP+AP+ + +EF+ +K+ IDY+ H P G D Y KKVGR+K
Sbjct: 98 CKWVDEVIPDAPWVVNQEFL----DKHQIDYVAHDSLPYADSSGAGKDVYEFVKKVGRFK 153
Query: 189 QIKRTEGVSSTDIVGRILLTFKQ 211
+ +RTEG+S++DI+ RI+ + Q
Sbjct: 154 ETQRTEGISTSDIIMRIVKDYNQ 176
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 255 QAPSPGAR--VVYIDGAFDLFHAGHVEILRSARQL---GDFLLVGVHDDQAIRDRRGYRP 309
Q+ P R VY DG +DLFH GH L A+ +LLVG +D+ +G R
Sbjct: 26 QSSPPTDRPVRVYADGIYDLFHFGHARSLEQAKLAFPNNTYLLVGCCNDETTHKYKG-RT 84
Query: 310 IMHLHERTLSVLACRYVDEVIIGAPWEVSRDMITTFNISLVVHGTVT-EGSSVVGIDSYA 368
+M ER S+ C++VDEVI APW V+++ + I V H ++ SS G D Y
Sbjct: 85 VMTAEERYESLRHCKWVDEVIPDAPWVVNQEFLDKHQIDYVAHDSLPYADSSGAGKDVYE 144
Query: 369 VPKSMGIFQTITSTKPITTVSVATRIIDNHEAYKKRNLKK 408
K +G F+ T+ I+T + RI+ ++ Y RNL +
Sbjct: 145 FVKKVGRFKETQRTEGISTSDIIMRIVKDYNQYVMRNLDR 184
>AT4G15130.1 | chr4:8637793-8639388 FORWARD LENGTH=305
Length = 304
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 8/142 (5%)
Query: 74 YMDGCFDLMHYGHANALRQAK--LLGDQLVVGVVSDEEIVANKGPPVLSMEERLTLVSGL 131
Y DG FDL H+GHA A+ QAK L+VG +DE KG V++ ER +
Sbjct: 24 YADGIFDLFHFGHARAIEQAKKSFPNTYLLVGCCNDEITNKFKGKTVMTESERYESLRHC 83
Query: 132 KWVDEVIPNAPYEITEEFMNTLFNKYNIDYIIHGDDPCLLPD--GTDAYALAKKVGRYKQ 189
KWVDEVIP+AP+ +T EF+ +K+ IDY+ H P G D Y K +G++K+
Sbjct: 84 KWVDEVIPDAPWVLTTEFL----DKHKIDYVAHDALPYADTSGAGNDVYEFVKSIGKFKE 139
Query: 190 IKRTEGVSSTDIVGRILLTFKQ 211
KRTEG+S++DI+ RI+ + Q
Sbjct: 140 TKRTEGISTSDIIMRIVKDYNQ 161
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 264 VYIDGAFDLFHAGHVEILRSARQL--GDFLLVGVHDDQAIRDRRGYRPIMHLHERTLSVL 321
VY DG FDLFH GH + A++ +LLVG +D+ +G + +M ER S+
Sbjct: 23 VYADGIFDLFHFGHARAIEQAKKSFPNTYLLVGCCNDEITNKFKG-KTVMTESERYESLR 81
Query: 322 ACRYVDEVIIGAPWEVSRDMITTFNISLVVHGTVT-EGSSVVGIDSYAVPKSMGIFQTIT 380
C++VDEVI APW ++ + + I V H + +S G D Y KS+G F+
Sbjct: 82 HCKWVDEVIPDAPWVLTTEFLDKHKIDYVAHDALPYADTSGAGNDVYEFVKSIGKFKETK 141
Query: 381 STKPITTVSVATRIIDNHEAYKKRNLKKKASEDRYYTQKKF 421
T+ I+T + RI+ ++ Y RNL DR Y++++
Sbjct: 142 RTEGISTSDIIMRIVKDYNQYVLRNL------DRGYSREEL 176
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,972,365
Number of extensions: 370677
Number of successful extensions: 876
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 861
Number of HSP's successfully gapped: 6
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)