BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0371000 Os10g0371000|AK119798
(196 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G08685.1 | chr4:5550563-5551259 FORWARD LENGTH=160 158 2e-39
AT5G45880.1 | chr5:18609934-18611066 REVERSE LENGTH=175 110 5e-25
AT1G78040.1 | chr1:29345993-29346840 FORWARD LENGTH=172 108 2e-24
AT1G29140.1 | chr1:10179029-10179811 FORWARD LENGTH=172 107 3e-24
AT4G18596.1 | chr4:10239114-10239728 FORWARD LENGTH=173 107 4e-24
AT5G10130.1 | chr5:3171551-3172428 REVERSE LENGTH=165 96 8e-21
>AT4G08685.1 | chr4:5550563-5551259 FORWARD LENGTH=160
Length = 159
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 99/139 (71%)
Query: 56 RPRRAGFVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGT 115
RP + FVVRGRV+CDTCLAGFETPASTYI+GA V++EC+ + T T S E +TD TG+
Sbjct: 21 RPNKNPFVVRGRVYCDTCLAGFETPASTYISGAVVRLECKDRRTMELTYSHEARTDSTGS 80
Query: 116 YNIPVNDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALGFQK 175
Y I VN++H+ + C+++LV S +C + G +RA V LT NG+ S+ R AN +GF +
Sbjct: 81 YKILVNEDHDEQFCDAMLVRSSQLRCSNVSPGHDRARVTLTRFNGIASDDRFANNMGFLR 140
Query: 176 DAPLAACAQILKMYEEVDD 194
DA + CA I+K+Y+E +D
Sbjct: 141 DAAMPGCADIMKLYQETED 159
>AT5G45880.1 | chr5:18609934-18611066 REVERSE LENGTH=175
Length = 174
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 4/130 (3%)
Query: 62 FVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIPVN 121
F ++G V+CDTC F T S ++ GAKVK+ECRS++ G T + E TD TG+Y + V
Sbjct: 35 FQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRSRTNGTITLTKEAVTDKTGSYKMEVT 94
Query: 122 DEHEHELCESVLVSSPDAKCGKIVAG---RERAPVFLTNNNGVTSN-VRLANALGFQKDA 177
+HE E+CE VLV SPD+ C + R A + LT N+G+ S+ R+ N LGF
Sbjct: 95 GDHEEEVCELVLVQSPDSGCSDVSTEAYLRNAAKISLTANDGIVSHETRIVNPLGFMVQT 154
Query: 178 PLAACAQILK 187
PLA C K
Sbjct: 155 PLADCPAAFK 164
>AT1G78040.1 | chr1:29345993-29346840 FORWARD LENGTH=172
Length = 171
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 62 FVVRGRVWCDTCLAGFETPASTY-IAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIPV 120
VV+G +CD C GFETP S+Y I GA VK+ C+ + T + + + +D G Y V
Sbjct: 30 MVVQGSTYCDICKFGFETPESSYFIPGATVKLSCKDRKTMEEVYTDKAVSDKEGKYKFIV 89
Query: 121 NDEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALGFQKDAPLA 180
+D+H ++C+ +LV S D C KI GRE++ V L + +G+ S +R AN +GF+K+
Sbjct: 90 HDDHRDQMCDVLLVKSSDKTCSKISVGREKSRVILNHYSGIASQIRHANNMGFEKEVSDV 149
Query: 181 ACAQILKMY---EEVDD 194
C+ + + Y E+ DD
Sbjct: 150 FCSALFQKYMVDEDEDD 166
>AT1G29140.1 | chr1:10179029-10179811 FORWARD LENGTH=172
Length = 171
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 4/130 (3%)
Query: 62 FVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIPVN 121
F ++G V+CDTC F T S ++ GAKVK+EC+ + T + E TD+ G Y + V
Sbjct: 32 FHIKGSVYCDTCRVQFITRISKFLEGAKVKLECKGRENQTVTLTKEAVTDNAGNYQMEVM 91
Query: 122 DEHEHELCESVLVSSPDAKCGKIVAG---RERAPVFLTNNNGVTSN-VRLANALGFQKDA 177
+HE E+CE VL+ SPD +CG + R A + LT N+G+ SN R N LGF +
Sbjct: 92 GDHEEEVCEIVLLQSPDPECGDVNNQEFLRNAARISLTANDGIVSNETRTINPLGFMRKT 151
Query: 178 PLAACAQILK 187
PLA C Q+ K
Sbjct: 152 PLAECPQVFK 161
>AT4G18596.1 | chr4:10239114-10239728 FORWARD LENGTH=173
Length = 172
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 4/130 (3%)
Query: 62 FVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIPVN 121
F ++G V+CDTC F T S ++ GAKVK+ECRS++ G T + E TD TG+Y + V
Sbjct: 33 FQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRSRTNGTVTLTKEAVTDKTGSYRMEVT 92
Query: 122 DEHEHELCESVLVSSPDAKCGKI---VAGRERAPVFLTNNNGVTSN-VRLANALGFQKDA 177
+HE E+CE VLV SPD+ C + R A + LT N+G+ S+ R+ N LGF
Sbjct: 93 GDHEEEVCELVLVESPDSGCSDVSKEAYLRNAAKISLTANDGIVSHETRIVNPLGFMVQT 152
Query: 178 PLAACAQILK 187
P A C K
Sbjct: 153 PSAECPAAFK 162
>AT5G10130.1 | chr5:3171551-3172428 REVERSE LENGTH=165
Length = 164
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 70/128 (54%)
Query: 62 FVVRGRVWCDTCLAGFETPASTYIAGAKVKVECRSKSTGAKTCSFEGQTDHTGTYNIPVN 121
F + G V+CDTC GFET A+ YI GA+V++ C+ + T T G Y + V
Sbjct: 28 FHIEGSVYCDTCRFGFETIATQYIRGARVRIVCKDRVTLKSELVGVAVTGPDGKYKVAVR 87
Query: 122 DEHEHELCESVLVSSPDAKCGKIVAGRERAPVFLTNNNGVTSNVRLANALGFQKDAPLAA 181
+ + + C + LV SP ++C + GR A V LT +NG S ANA+GF +D PL
Sbjct: 88 GDRQDQQCLAELVHSPLSRCQEADPGRSTATVILTRSNGAASTRHYANAMGFFRDEPLRG 147
Query: 182 CAQILKMY 189
CA + K Y
Sbjct: 148 CAALRKRY 155
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,285,232
Number of extensions: 123199
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 6
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)