BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0363300 Os10g0363300|AK058817
(244 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G36160.1 | chr1:13534196-13543773 FORWARD LENGTH=2255 241 3e-64
AT1G36180.1 | chr1:13546047-13558339 FORWARD LENGTH=2356 237 4e-63
>AT1G36160.1 | chr1:13534196-13543773 FORWARD LENGTH=2255
Length = 2254
Score = 241 bits (614), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 172/244 (70%), Gaps = 1/244 (0%)
Query: 1 SKINPEHIEMYAERTAKGNVLEPEGLVEIKFRPKELEECMLRLDPELIKLSTRLREMKKE 60
S+IN +++EMYA+ TA+GNVLEPEG +EIKFR KEL ECM RLD +LI L +L++ K+
Sbjct: 2012 SQINSDYVEMYADETARGNVLEPEGTIEIKFRTKELLECMGRLDQKLISLKAKLQDAKQS 2071
Query: 61 NAGLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEEXXXX 120
A + ++ ++ I AR KQL+P+Y Q+AT+FAELHDTS RMAAKGVI VV+W
Sbjct: 2072 EA-YANIELLQQQIKAREKQLLPVYIQIATKFAELHDTSMRMAAKGVIKSVVEWSGSRSF 2130
Query: 121 XXXXXXXXVTEDALAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFA 180
+ E +L K +REA+G+ L+ KS++ I+ W+ +S+ + G E W +D+ FF
Sbjct: 2131 FYKKLNRRIAESSLVKNVREASGDNLAYKSSMRLIQDWFCNSDIAKGKEEAWTDDQVFFT 2190
Query: 181 WKDDPTNYENQLEELKAERVSKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQVIDGLR 240
WKD+ +NYE +L EL+A+++ L+ + S D++ALP GL+ +LNK+ PSKRE+++ +R
Sbjct: 2191 WKDNVSNYELKLSELRAQKLLNQLAEIGNSSDLQALPQGLANLLNKVEPSKREELVAAIR 2250
Query: 241 QLLG 244
++LG
Sbjct: 2251 KVLG 2254
>AT1G36180.1 | chr1:13546047-13558339 FORWARD LENGTH=2356
Length = 2355
Score = 237 bits (604), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 169/244 (69%), Gaps = 1/244 (0%)
Query: 1 SKINPEHIEMYAERTAKGNVLEPEGLVEIKFRPKELEECMLRLDPELIKLSTRLREMKKE 60
S+IN ++IEMYA+ TA+GNVLEPEG++EIKFR KEL ECM RLD LI L +++ K+
Sbjct: 2113 SQINSDYIEMYADETARGNVLEPEGMIEIKFRRKELLECMGRLDQTLINLKANIQDAKR- 2171
Query: 61 NAGLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEEXXXX 120
N + ++ ++ I R KQL+P+YTQ+AT+FAELHDTS RMAAKGVI VV+W
Sbjct: 2172 NKAYANIELLQKQIKTREKQLLPVYTQIATKFAELHDTSMRMAAKGVIKSVVEWSGSRSF 2231
Query: 121 XXXXXXXXVTEDALAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFA 180
+ E +L + IR+A+G+ LS KSA+ I+ W+ S + G E W +D+ FF
Sbjct: 2232 FYKKLYRRIAESSLVRNIRKASGDILSYKSAMGLIQDWFRKSEIAKGKEEAWTDDQLFFT 2291
Query: 181 WKDDPTNYENQLEELKAERVSKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQVIDGLR 240
WKD+ +NYE +L EL+ +++ L+ + S D++ALP GL+ +LNK++ S+RE+++D +R
Sbjct: 2292 WKDNVSNYEQKLSELRTQKLLNQLAEIGNSSDLQALPQGLANLLNKVDLSRREELVDAIR 2351
Query: 241 QLLG 244
++LG
Sbjct: 2352 KVLG 2355
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,917,737
Number of extensions: 187843
Number of successful extensions: 553
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)