BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0361000 Os10g0361000|AK058583
(164 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184 108 1e-24
AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182 105 7e-24
AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105 89 1e-18
>AT2G22170.1 | chr2:9427010-9427742 REVERSE LENGTH=184
Length = 183
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 32 ILVKTDGRRNAGTDARVSLQVRAASGPTLTITNLESWG-QMAAGHDYFEKGNLDRFRGAG 90
++T AGTD+ +S +V G + I NLE+WG M G++Y+E+GNLD F G
Sbjct: 35 FFLRTGSTFKAGTDSIISARVYDKYGDYIGIRNLEAWGGLMGPGYNYYERGNLDIFSGKA 94
Query: 91 ACMPSEPCNMVLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEAPHML 150
C+PS C++ LTSDGSG+ GWYV+YV VT G + S + V+QWLA D +P+ L
Sbjct: 95 PCLPSPVCSLNLTSDGSGDHHGWYVNYVEVTTAGVHAKCSY-QSFDVEQWLASDTSPYEL 153
Query: 151 TAERRGCGI 159
+A R C +
Sbjct: 154 SAVRNNCPV 162
>AT4G39730.1 | chr4:18432950-18433581 FORWARD LENGTH=182
Length = 181
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 42 AGTDARVSLQVRAASGPTLTITNLESW-GQMAAGHDYFEKGNLDRFRGAGACMPSEPCNM 100
AGTD+ +S ++ G + I NL++W G M ++YFE+GNLD F G C+PS C +
Sbjct: 43 AGTDSIISARIYDKDGDYIGIKNLQAWAGLMGPDYNYFERGNLDIFSGRAPCLPSPICAL 102
Query: 101 VLTSDGSGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEAPHMLTAERRGCGI 159
LTSDGSG+ GWYV+YV +T G + S T + ++QWLA D +P+ LTA R C +
Sbjct: 103 NLTSDGSGDHHGWYVNYVEITTAGVHAQCS-TQDFEIEQWLATDTSPYELTAVRNNCPV 160
>AT5G65158.1 | chr5:26030390-26030704 FORWARD LENGTH=105
Length = 104
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 48 VSLQVRAASGPTLTITNLESWG-QMAAGHDYFEKGNLDRFRGAGACMPSEPCNMVLTSDG 106
+SL++ + G I++L SWG M HDYFE+GNLD F G G+C+ C M LTSDG
Sbjct: 1 MSLRLYDSYGQDAVISDLVSWGGLMGPFHDYFERGNLDIFSGLGSCLSGPVCAMNLTSDG 60
Query: 107 SGNKPGWYVSYVMVTQLGQGSLPSMTHRWAVDQWLAIDEAPHML 150
SG+ GWY +YV VT ++ V+QWLA D +P+ L
Sbjct: 61 SGDHHGWYCNYVEVTMSESRRRSCSQEKFEVEQWLARDASPYEL 104
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,033,514
Number of extensions: 118084
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 3
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)