BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0346200 Os10g0346200|AK106542
         (360 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14835.1  | chr2:6367238-6370610 FORWARD LENGTH=344            381   e-106

>AT2G14835.1 | chr2:6367238-6370610 FORWARD LENGTH=344
          Length = 343

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/362 (53%), Positives = 235/362 (64%), Gaps = 25/362 (6%)

Query: 1   MVVCKCRKATRVYCFVHKVPVCGECICFPEHQLCVVKNYAEWVVNPDYDWPQHCSSCNSV 60
           MVVCKC+KATR+YCFVHK PVCGECICFPEHQ CVV+ Y+EWV++ +YD P+ C    + 
Sbjct: 1   MVVCKCKKATRLYCFVHKAPVCGECICFPEHQTCVVRTYSEWVIDGEYDQPKCCQCQATF 60

Query: 61  LEAGSEETTRLGCLHVMHTRCLISHIQSYSTQTAPAGYVCPSCSTPIWPPSTIKDTGSRL 120
            E    + TRLGCLH +HT CL+S I+S+   TAPAGYVCP+CSTPIWPP  +KD GSRL
Sbjct: 61  DEGAGHQVTRLGCLHAIHTSCLVSLIKSFPPHTAPAGYVCPACSTPIWPPMMVKDAGSRL 120

Query: 121 HSKLKEAIAQTGLEKNVFGNHFVTMPKADTRTPPAFASDPLKRVSISGDRESNGANIINS 180
           H+ L+E I QTGLEKN+ GNH V+        PPAFASD L  +S S      G N+ + 
Sbjct: 121 HALLREVITQTGLEKNLLGNHPVSRSTESRSPPPAFASDALINIS-SSSHTQEGNNLPDG 179

Query: 181 AIDANVQSGGMYSSATVGSGTPSHVEPEIVEIDGPSPITTQFPEQESNFIRSPSPHGPSA 240
               +V   G YS + V          EIVEID         P    ++++S SP   +A
Sbjct: 180 ---YSVAGNGEYSKSAVS---------EIVEID--------VPASAGSYMKSSSPGLAAA 219

Query: 241 MTRKGANYVERQNSEISYYADDEDANRKKYTKRGTFRHKFLRMLLPFWSSALPTLPVTAP 300
             RKG   V+RQNSE  YYADDED NRKKY++RG  RHKFLR LLPFWSSALPTLPVTAP
Sbjct: 220 AARKGVPAVDRQNSETLYYADDEDGNRKKYSRRGPLRHKFLRALLPFWSSALPTLPVTAP 279

Query: 301 PRKES----DAPEGRSRHQKSSRMDPTKXXXXXXXXXXXXTMGILYYRLTQRSLSENFIE 356
           PRK++    D  EGR RHQ+SS+MD  K            TMGILYYRL  +++ +   +
Sbjct: 280 PRKDAAKADDGSEGRVRHQRSSKMDIRKILIFIALIACMATMGILYYRLALQAIGQELPD 339

Query: 357 DE 358
           +E
Sbjct: 340 EE 341



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,414,767
Number of extensions: 369037
Number of successful extensions: 1186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1188
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)