BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0343200 Os10g0343200|AK108244
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180 155 2e-38
AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181 113 8e-26
AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155 89 1e-18
AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153 81 3e-16
AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153 76 1e-14
AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155 64 7e-11
AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153 51 5e-07
>AT2G28370.1 | chr2:12132092-12133447 FORWARD LENGTH=180
Length = 179
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 96/160 (60%)
Query: 44 ENAQPRGVRMKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDDFPSVSAFCYLVAAAI 103
E P VRM D ST DFPSV+AFCYLVAA
Sbjct: 20 EVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMASTSDFPSVTAFCYLVAATG 79
Query: 104 LQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFXXXXXXXXXXXXXAACASAGITVLIGND 163
LQ LWSL+LA+VD+YA++VKRSL+N + V +F AACASAGITVLI ND
Sbjct: 80 LQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTSTLTFAAACASAGITVLIDND 139
Query: 164 LNICANNHCASFETATAMAFISWFALAPSCVLNFWSMASR 203
LN CA NHC FET+TA+AFISWFA PS + NFWS+ASR
Sbjct: 140 LNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLASR 179
>AT2G37200.1 | chr2:15622098-15623047 REVERSE LENGTH=181
Length = 180
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 51 VRMKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDDFPSVSAFCYLVAAAILQCLWSL 110
VRMKD +T DF S +AFC LV A LQ LWSL
Sbjct: 29 VRMKDVQGMPGTTGGLILRLSQFVPALISVSVMVTTSDFRSATAFCCLVLAVSLQSLWSL 88
Query: 111 SLAVVDIYALLVKRSLRNPQAVCIFXXXXXXXXXXXXXAACASAGITVLIGNDLNICANN 170
SL ++D YALLV+RSLRN V F AA ASAGITVLI NDL C N
Sbjct: 89 SLFIIDAYALLVRRSLRNHSVVQCFTIGDGVTSTLTFAAASASAGITVLI-NDLGQCNVN 147
Query: 171 HCASFETATAMAFISWFALAPSCVLNFWSMASR 203
HC FETATAMAFISWFA++PS +LNFWS+A+
Sbjct: 148 HCTRFETATAMAFISWFAVSPSFILNFWSLATH 180
>AT3G53850.1 | chr3:19948262-19948994 REVERSE LENGTH=155
Length = 154
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 85 STDDFPSVSAFCYLVAAAILQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFXXXXXXXXX 144
S +F +AFCYL+A+ LQ LWS LA +D+YAL K+ L+NP V +F
Sbjct: 33 SAKEFSVHTAFCYLIASMGLQLLWSFGLACLDVYALRGKKDLQNPILVSLFVVGDWVTAM 92
Query: 145 XXXXAACASAGITVLIGNDLNIC---ANNHCASFETATAMAFISWFALAPSCVLNFWSMA 201
AAC+SAG+ VL D+ C + C +E A A++F++W +A S + FW +A
Sbjct: 93 LSLAAACSSAGVVVLYEKDIKYCNTQSQYPCLRYEVAVALSFVTWIQIAVSSHVTFWILA 152
Query: 202 S 202
S
Sbjct: 153 S 153
>AT3G23200.1 | chr3:8281659-8282603 FORWARD LENGTH=153
Length = 152
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 85 STDDFPSVSAFCYLVAAAILQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFXXXXXXXXX 144
++ F S +AFCYL+AA LQ +WS LA++D +AL+ K++L +P V +F
Sbjct: 33 TSGGFFSFTAFCYLIAAMGLQVIWSFGLAILDTFALVRKKTLLSPVLVSLFVVGDWVTST 92
Query: 145 XXXXAACASAGITVLIGNDLNICA-NNHCASFETATAMAFISWFALAPSCVLNFWSMAS 202
A +SAGITVL DL C+ C ++ + A+AF+ W +A S + W +AS
Sbjct: 93 LSLAGASSSAGITVLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151
>AT5G02060.1 | chr5:404908-405774 FORWARD LENGTH=153
Length = 152
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 85 STDDFPSVSAFCYLVAAAILQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFXXXXXXXXX 144
S+ DF + +AFC+LVA+ LQ +WS LA +D+YA+ K LR+P + +F
Sbjct: 33 SSYDFSNYTAFCFLVASMGLQLIWSFGLACLDVYAIRRKSDLRSPILLSLFTVGDWVTAL 92
Query: 145 XXXXAACASAGITVLIGNDLNICANN---HCASFETATAMAFISWFALAPSCVLNFW 198
AAC+SAG+TVL D C C F+ + ++F +WF A S FW
Sbjct: 93 LALAAACSSAGVTVLFTKDTEFCRQQPALSCDRFQISVGLSFFNWFLAAISSHTMFW 149
>AT3G50810.1 | chr3:18889002-18889868 REVERSE LENGTH=155
Length = 154
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 88 DFPSVSAFCYLVAAAILQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFXXXXXXXXXXXX 147
DF + FCYL + WS+ LA+ D Y++LVK + + + I
Sbjct: 36 DFYDFTTFCYLAMVMAIVTPWSILLALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSL 95
Query: 148 XAACASAGITVLIGN-DLNICANNHCASFETATAMAFISWFALAPSCVLNFWSMAS 202
ACA A T L+ + D IC + C ++ + A+AF+ WF L S + NFWS+ S
Sbjct: 96 GGACAVASATELLASADGKICDGSLCIQYQVSAALAFLCWFLLLASALFNFWSLPS 151
>AT4G37235.1 | chr4:17518052-17519671 FORWARD LENGTH=153
Length = 152
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 87 DDFPSVSAFCYLVAAAILQCLWSLSLAVVDIYALLVKRSLRNPQAVCIFXXXXXXXXXXX 146
+DF + + FCYLV L WS++LA+++ Y++LVK+ + +
Sbjct: 37 EDFYAYTTFCYLVTVMGLVTPWSVTLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLS 96
Query: 147 XXAACASAGITVLIGNDLNICANNHCASFETATAMAFISWFALAPSCVLNF 197
AC++A + VL+ + C ++ + MAF+S F S NF
Sbjct: 97 LGGACSTASVAVLLMD----AGEKQCDRYKLSATMAFLSSFLSFASTFFNF 143
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,345,465
Number of extensions: 58430
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 8
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)