BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0335000 Os10g0335000|Os10g0335000
(186 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21110.1 | chr2:9050290-9050850 REVERSE LENGTH=187 59 1e-09
AT1G22900.1 | chr1:8103910-8104491 REVERSE LENGTH=194 57 5e-09
AT5G42500.1 | chr5:16994359-16994916 REVERSE LENGTH=186 56 1e-08
AT4G38700.1 | chr4:18076583-18077155 REVERSE LENGTH=191 54 4e-08
AT5G49040.1 | chr5:19882676-19883251 REVERSE LENGTH=192 53 1e-07
AT5G42510.1 | chr5:16998268-16998816 REVERSE LENGTH=183 52 2e-07
AT1G65870.1 | chr1:24503624-24504193 FORWARD LENGTH=190 50 6e-07
AT1G58170.1 | chr1:21536188-21536745 FORWARD LENGTH=186 50 7e-07
AT3G13650.1 | chr3:4463056-4463616 FORWARD LENGTH=187 50 9e-07
AT1G55210.1 | chr1:20598057-20598620 REVERSE LENGTH=188 49 1e-06
AT3G13662.1 | chr3:4467090-4468470 FORWARD LENGTH=174 48 2e-06
>AT2G21110.1 | chr2:9050290-9050850 REVERSE LENGTH=187
Length = 186
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 12 RPVLRDQCEIT-MRLYLHQVVTGPNHNQETMVPSSH--------PASFGMIVINDWPIYD 62
RP+ Q +T + + H +T PN + + +H P+ FG + D P+
Sbjct: 27 RPITPKQLVVTNLHFFFHDTLTAPNPSAILIAKPTHTRGDNDSSPSPFGSLFALDDPLTV 86
Query: 63 GPDFNTSTIVAHARGMHVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMGT---TPETGEW 119
GPD S + +ARGM+V + T ++ F +FNGS + V T + E
Sbjct: 87 GPD-PKSEKIGNARGMYVSSGKHVPTLTMYVDFGFTSGKFNGSSIAVFSRNTITEKEREV 145
Query: 120 AIVGGTGQLAMAYGTIQHN 138
A+VGG G+ MA G Q N
Sbjct: 146 AVVGGRGRFRMARGVAQLN 164
>AT1G22900.1 | chr1:8103910-8104491 REVERSE LENGTH=194
Length = 193
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 2 ASPFFKVIPVRPVLRDQCEITMRLYLHQVVTG--PNHNQETMVPSSHPAS--FGMIVIND 57
+ P+ K P + D+ + Y H +++G P + P ++ ++ FG ++I D
Sbjct: 33 SKPYSKTTPFQGNKPDKL-THLHFYFHDIISGDKPTTIRVAEAPGTNSSATVFGAVLIVD 91
Query: 58 WPIYDGPDFNTSTIVAHARGMHVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMGTTP--- 114
P+ +GP+ +S V A+G++ D + N F + FNGS + G P
Sbjct: 92 APVTEGPEL-SSKEVGRAQGLYASTDMKTFGFTMVFNFVFTEGEFNGSTAALYGRNPILL 150
Query: 115 ETGEWAIVGGTGQLAMAYG 133
E E I+GGTG A G
Sbjct: 151 EERELPIIGGTGDFRFARG 169
>AT5G42500.1 | chr5:16994359-16994916 REVERSE LENGTH=186
Length = 185
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 23 MRLYLHQVVTGPN----HNQETMVPSSHPASFGMIVINDWPIYDGPDFNTSTIVAHARGM 78
+ Y H V++G E +S +FG+I+I D P+ +GPD +S V A+GM
Sbjct: 45 LHFYFHDVISGDKPTAVKVAEARRTNSSNVNFGVIMIADDPLTEGPD-PSSKEVGRAQGM 103
Query: 79 HVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMGTT---PETGEWAIVGGTGQLAMAYGTI 135
+ N ++ N+ F FNGS + + G + E I+GGTG A G
Sbjct: 104 YALTAMKNISFTMVFNLAFTAGEFNGSTVAMYGRNEIFSKVREMPIIGGTGAFRFARGYA 163
Query: 136 QHNIVK 141
Q K
Sbjct: 164 QAKTYK 169
>AT4G38700.1 | chr4:18076583-18077155 REVERSE LENGTH=191
Length = 190
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 20/148 (13%)
Query: 12 RPVLRDQCEIT-MRLYLHQVVTGPN-------HNQETMVPSSHPASFGMIVINDWPIYDG 63
+P ++ ++T +R YLH ++G N H T S+ P FG + + D P+ G
Sbjct: 29 KPAKLNEEKVTRVRFYLHDTLSGQNPTAVRIAHANLTG-GSASPVGFGSLFVIDDPLTVG 87
Query: 64 PDFNTSTIVAHARGMHVQ--VDQVNNTWYTSMNIEFVDARFNGSKLQVMGTTP---ETGE 118
P+ ++ I + +GM+V D T ++ F +FNGS + + P E GE
Sbjct: 88 PEKHSKEI-GNGQGMYVSGCKDLSKFTIVMYADLAFTAGKFNGSSISIFSRNPVAEEVGE 146
Query: 119 W--AIVGGTGQLAMAYGTIQHNIVKNNP 144
AIVGG G+ MA G ++ VK N
Sbjct: 147 REIAIVGGRGKFRMARGFVK---VKTNK 171
>AT5G49040.1 | chr5:19882676-19883251 REVERSE LENGTH=192
Length = 191
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 23 MRLYLHQVVTGPN----HNQETMVPSSHPASFGMIVINDWPIYDGPDFNTSTIVAHARGM 78
+R+Y H +VTG N Q + S + FG I + D + N ST+V A+GM
Sbjct: 48 LRVYWHDIVTGRNPSSIRIQGPVAKYSSSSYFGSITMIDNALTLDVPIN-STVVGQAQGM 106
Query: 79 HVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMG---TTPETGEWAIVGGTGQLAMAYGTI 135
+V Q +MN+ F ++NGS + ++G + E +VGG+G A G +
Sbjct: 107 YVGAAQKEIGLLMAMNLAFKTGKYNGSTITILGRNTVMSKVREMPVVGGSGMFRFARGYV 166
Query: 136 Q 136
+
Sbjct: 167 E 167
>AT5G42510.1 | chr5:16998268-16998816 REVERSE LENGTH=183
Length = 182
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 23 MRLYLHQVVTGPNHNQETMVPSSHPAS-----FGMIVINDWPIYDGPDFNTSTIVAHARG 77
+ Y H V++G + V + P + FG+I+I D P+ +GPD +S V A+G
Sbjct: 42 LHFYFHDVISG-DKPTAVKVAEARPTTTLNVKFGVIMIADDPLTEGPD-PSSKEVGRAQG 99
Query: 78 MHVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMGTT---PETGEWAIVGGTGQLAMAYG 133
M+ + + N F FNGS + V G + E I+GGTG A G
Sbjct: 100 MYASTAMKDIVFTMVFNYVFTAGEFNGSTIAVYGRNDIFSKVRELPIIGGTGAFRFARG 158
>AT1G65870.1 | chr1:24503624-24504193 FORWARD LENGTH=190
Length = 189
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 23 MRLYLHQVVTG--PNHNQETMVPSSHPAS--FGMIVINDWPIYDGPDFNTSTIVAHARGM 78
+ Y H +V+G P Q P+++ ++ FG++ + D + GP+ TS V A+GM
Sbjct: 47 LHFYFHDIVSGDKPTSVQVANGPTTNSSATGFGLVAVVDDKLTVGPEI-TSEEVGRAQGM 105
Query: 79 HVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMGTTP---ETGEWAIVGGTGQLAMAYG-- 133
+ DQ + N+ F +F+ S + + G P + E I+GGTG G
Sbjct: 106 YASADQNKLGLLMAFNLVFTKGKFSDSTVAMYGRNPVLSKVREMPIIGGTGAFRFGRGYA 165
Query: 134 ---TIQHNIVKNNPGIE 147
T+ NI + +E
Sbjct: 166 LAKTLVFNITSGDAVVE 182
>AT1G58170.1 | chr1:21536188-21536745 FORWARD LENGTH=186
Length = 185
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 24 RLYLHQVVTGPNHNQETMV--PSSHPAS--FGMIVINDWPIYDGPDFNTSTIVAHARGMH 79
R+Y H +VTG + + +++ P + + FG++ + D P+ P +S +V A+G +
Sbjct: 43 RVYWHDIVTGQDSSSVSIMNPPKKYTGATGFGLMRMIDNPLTLTPKL-SSKMVGRAQGFY 101
Query: 80 VQVDQVNNTWYTSMNIEFVDARFNGSKLQVMGTTP---ETGEWAIVGGTGQLAMAYGTIQ 136
+ +MN +D ++NGS + V+G + E ++GG+G A G +Q
Sbjct: 102 AGTSKEEIGLLMAMNFAILDGKYNGSTITVLGRNSVFDKVREMPVIGGSGLFRFARGYVQ 161
>AT3G13650.1 | chr3:4463056-4463616 FORWARD LENGTH=187
Length = 186
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 15 LRDQCEITMRLYLHQVVTGPNHNQETMVP-SSHPASFGMIVINDWPIYDGPDFNTSTIVA 73
LR + R+Y H +++G N + + P S+ + FG + + D + N ST+V
Sbjct: 38 LRKEKLTHFRVYWHDILSGSNPSSVVINPPISNSSFFGSVTVIDNRLTTEVAVN-STLVG 96
Query: 74 HARGMHVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMGTTP---ETGEWAIVGGTGQLAM 130
A+G++ Q + + MN F ++NGS + ++G + E ++GG+G
Sbjct: 97 QAQGIYAATGQRDASALMVMNFAFKTGKYNGSSIAILGRNAVLTKVREMPVIGGSGLFRF 156
Query: 131 AYGTIQ 136
A G ++
Sbjct: 157 ARGYVE 162
>AT1G55210.1 | chr1:20598057-20598620 REVERSE LENGTH=188
Length = 187
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 24 RLYLHQVVTGPNHNQETMV--PSSHPASFGMIVINDWPIYDGPDFNTSTIVAHARGMHVQ 81
++Y H +++GPN M+ P ++ + FG I + D + N ST++ A+G +
Sbjct: 48 KVYWHDILSGPNPT-SIMIQPPVTNSSYFGAISMIDNALTAKVPMN-STVLGQAQGFYAG 105
Query: 82 VDQVNNTWYTSMNIEFVDARFNGSKLQVMG---TTPETGEWAIVGGTGQLAMAYGTIQ 136
Q + +MN F ++NGS + ++G E E IVGG+G A G ++
Sbjct: 106 AAQKELGFLMAMNFAFKTGKYNGSTITILGRNTALSEVREMPIVGGSGLFRFARGYVE 163
>AT3G13662.1 | chr3:4467090-4468470 FORWARD LENGTH=174
Length = 173
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 23 MRLYLHQVVTGPNHN----QETMVPSSHPASFGMIVINDWPIYDGPDFNTSTIVAHARGM 78
+R+Y H V G N + Q+ ++ SS S M+ +D +D P +T+V A+GM
Sbjct: 45 LRVYWHNSVNGRNPSSVMIQQPVLNSSLSGSITMM--DDPLTFDVP--RNATVVGQAQGM 100
Query: 79 HVQVDQVNNTWYTSMNIEFVDARFNGSKLQVMG---TTPETGEWAIVGGTGQLAMAYGTI 135
+V Q + MN F ++NGS + ++G + E +VGG+G A G +
Sbjct: 101 YVAAAQGEIGFLMVMNFAFTTGKYNGSTITILGRNVVMSKVREMPVVGGSGIFRFARGYV 160
Query: 136 Q 136
+
Sbjct: 161 E 161
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,216,908
Number of extensions: 171475
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 11
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)