BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0316400 Os10g0316400|AK065772
(1511 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07980.1 | chr5:2549432-2554669 REVERSE LENGTH=1502 146 1e-34
AT5G07970.1 | chr5:2544126-2547916 REVERSE LENGTH=1098 142 2e-33
AT5G07940.1 | chr5:2534720-2540086 FORWARD LENGTH=1527 140 5e-33
AT3G29385.1 | chr3:11284395-11285402 REVERSE LENGTH=219 87 5e-17
>AT5G07980.1 | chr5:2549432-2554669 REVERSE LENGTH=1502
Length = 1501
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 11/240 (4%)
Query: 1274 VRRPKKRKFKAPVLVSWN-QIIDGHQKLADMSTLGMDWPEATNRLIEVEDEADIQEDALI 1332
V +PKKRK L+ WN +++ GHQ+L + +DW ATNR E + + ED+
Sbjct: 1271 VNKPKKRKTATSELIPWNKEVMQGHQRLKTLGEAEVDWARATNRFAEKVEFETLLEDSPP 1330
Query: 1333 LYLPRKRLIMTSRLIQQLLPSIPAAILRAQAISMYQSVTYTIAKLTVGDACSMPSNSSLD 1392
+ ++RL+ T++L+QQL PA ++ A S Y+ V YT A+ +GDACS S +
Sbjct: 1331 IK-SKRRLVYTTQLMQQLCSPPPARVISLVASSNYEFVAYTAARGALGDACSSSSTDRSE 1389
Query: 1393 TGTLISSGDKSYEQIENDKMRDRF-TKAVEFFIPRFKKMENDFVSLNKRSSMLDIQLECQ 1451
+ + E+ + +K+ D++ +KA E FI R +K+E DF L +++ D+++E Q
Sbjct: 1390 GFWPPNISNPLSERTKTEKISDQYISKAAEDFISRTRKLETDFARLENGTTIPDLRVEVQ 1449
Query: 1452 DLERISIVNRLGRFHARNYHAAGVEASSTDLAPRRIYRDRHVMTFAVPVNLPDGVPCLLL 1511
DLE+ +++NR +FH + L RI R+V +P N+PD V CL L
Sbjct: 1450 DLEKFAVINRFAKFHPPSMDRT--------LNSVRINPQRYVTVAPMPQNIPDRVQCLSL 1501
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 274 AASLDPTEEKILYGDDNNFTGLLGEDDSSD-GVPGHDXXXXXXXXXIPVSAQGGSWSALM 332
+ +LDPTEEKIL+G D+N G +S+D + G+ S Q GSWSALM
Sbjct: 424 STALDPTEEKILFGSDDNLWEAFG--NSTDMSLTGNLMSSSSDLFDGCPSLQSGSWSALM 481
Query: 333 QEALQSTSSKNGLQEEWS 350
Q A+ TSS + EW+
Sbjct: 482 QSAVAETSSDDAGVHEWA 499
>AT5G07970.1 | chr5:2544126-2547916 REVERSE LENGTH=1098
Length = 1097
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 132/238 (55%), Gaps = 11/238 (4%)
Query: 1274 VRRPKKRKFKAPVLVSWN-QIIDGHQKLADMSTLGMDWPEATNRLIEVEDEADIQEDALI 1332
V +PKKRK L+SW+ +++ Q+L + +DW ATNR E + A + ED
Sbjct: 867 VYKPKKRKNVTSELLSWSKEVMQRPQRLKTLGEAEVDWARATNRFAEKVEFATLLEDGPP 926
Query: 1333 LYLPRKRLIMTSRLIQQLLPSIPAAILRAQAISMYQSVTYTIAKLTVGDACSMPSNSSLD 1392
+ ++RLI T++L+QQL +P + ++ Y+ V Y+ A+ +GDACS S ++
Sbjct: 927 IR-SKRRLIYTTQLMQQLFRPLPGRV--KSLVTSYEFVAYSAARAALGDACSSTSTDRIE 983
Query: 1393 TGTLISSGDKSYEQIENDKMRDRF-TKAVEFFIPRFKKMENDFVSLNKRSSMLDIQLECQ 1451
L ++ + E+ E +KM D++ +KA E FI R KK+E DF L K +++ D+++E Q
Sbjct: 984 GFLLQNNLNPLSERTETEKMSDQYISKAAEDFISRTKKLETDFAGLEKGTTITDLRVEVQ 1043
Query: 1452 DLERISIVNRLGRFHARNYHAAGVEASSTDLAPRRIYRDRHVMTFAVPVNLPDGVPCL 1509
DLER +++NR FH + ++ R+ R+V VP ++PD V CL
Sbjct: 1044 DLERFAVINRFASFHQS------SSSMDRSVSSLRLNPQRYVTVAPVPRHIPDRVQCL 1095
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 274 AASLDPTEEKILYGDDNNFTGLLGEDDSSD-GVPGHDXXXXXXXXXIPVSAQGGSWSALM 332
+ +LDPTEEKIL+G D+N G +S+D + G+ S Q GSWSALM
Sbjct: 421 STTLDPTEEKILFGSDDNLWEAFG--NSTDMSLTGNLMSSSSDLFDACPSLQSGSWSALM 478
Query: 333 QEALQSTSSKNGLQEEWSS 351
Q A+ T+S + EW S
Sbjct: 479 QSAVAETASDDAGVHEWGS 497
>AT5G07940.1 | chr5:2534720-2540086 FORWARD LENGTH=1527
Length = 1526
Score = 140 bits (353), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 172/334 (51%), Gaps = 29/334 (8%)
Query: 1199 GDKLMINPQISP-WF-QHGSNRNGHNLAMYSVRKTASPYNHPKVPWSMDTSSVSGHGLE- 1255
D I+PQ++P W+ Q+G+ +NG M + +P + ++++S H ++
Sbjct: 1201 ADHQQISPQMAPSWYSQYGTFKNGLVQPMNDTGRF-TPLKIGEQSSNVESSVDGTHTVQS 1259
Query: 1256 CSTSVRPEMPS---GLKVSSS-------------VRRPKKRKFKAPVLVSWN-QIIDGHQ 1298
C + +M G++ SS V +PKKRK L SWN +++ Q
Sbjct: 1260 CKQCLMEQMSGSAPGVETPSSDSLLHGATDKLLKVDKPKKRKTATSELQSWNKEVMQDSQ 1319
Query: 1299 KLADMSTLGMDWPEATNRLIEVEDEADIQEDALILYLPRKRLIMTSRLIQQLLPSIPAAI 1358
+L +S ++W TNR E + + ED+ + ++RLI T++L+QQL PA +
Sbjct: 1320 RLKTLSEAEINWARETNRFAEKVEFETLLEDSPPIR-SKRRLIHTTQLMQQLFSPPPARV 1378
Query: 1359 LRAQAISMYQSVTYTIAKLTVGDACSMPSNSSLDTGTLISSGDKSYEQIENDKMRDRF-T 1417
+ A S Y V YT + +GDACS S + + ++ + E+ EN+K+ D++ +
Sbjct: 1379 ISLVASSNYDVVAYTAGRAALGDACSSSSTDRSEGFSPPNNSNPLSERTENEKISDQYIS 1438
Query: 1418 KAVEFFIPRFKKMENDFVSLNKRSSMLDIQLECQDLERISIVNRLGRFHARNYHAAGVEA 1477
KA E FI R +K+E DF L +++ D+++E QDLE+ +++NR +FH ++ +
Sbjct: 1439 KAAEDFISRTRKLETDFAGLENGTTIPDLRVEVQDLEKFAVINRFAKFHPP---SSSMNR 1495
Query: 1478 SSTDLAPRRIYRDRHVMTFAVPVNLPDGVPCLLL 1511
+ L ++ R+V +P N+PD V CL L
Sbjct: 1496 TVNSL---KLNLQRYVTIAPMPQNIPDRVQCLSL 1526
>AT3G29385.1 | chr3:11284395-11285402 REVERSE LENGTH=219
Length = 218
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 26/234 (11%)
Query: 1278 KKRKFKAPVLVSWNQI-IDGHQKLADMSTLGMDWPEATNRLIEVEDEADIQEDALILYLP 1336
KKRK + W+++ + G + ++ +W ATN L E D + +
Sbjct: 7 KKRKSSTFLQSPWHKVYLQGSELCHNIRIAEQEWNLATNTLSEKVDTNEAISPS------ 60
Query: 1337 RKRLIMTSRLIQQLLPSIPAAILRAQAISM-YQSVTYTIAKLTVGDACSMPSNSSLDTGT 1395
++RL+ ++ L+QQLL P + ++ Y+ V Y ++++ + ++CS+ S LD
Sbjct: 61 KRRLLSSTHLMQQLLQPAPTFVFLGDNAALNYEIVLYYVSRINLANSCSLKCRSDLDKSI 120
Query: 1396 LISSGDKSYEQIENDKMRDRFTKAVEFFIPRFKKMENDFVSLNKRSSMLDIQLECQDLER 1455
+ + Q + + V F + +K+E++F SL + +S+LDI E QDLER
Sbjct: 121 NRQTSKTASNQDQQHSL------LVNAFNEKIQKLESNFQSLERTTSILDIIFEIQDLER 174
Query: 1456 ISIVNRLGRFHARNYHAAGVEASSTDLAPRRIYRDRHVMTFAVPVNLPDGVPCL 1509
S++N LG+FH R +R+ ++ + +P+NLP+ + CL
Sbjct: 175 FSMINHLGKFHNRAK------------TFKRLIPHKYAVAIQMPMNLPEPLHCL 216
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 32,077,114
Number of extensions: 1347032
Number of successful extensions: 2980
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2962
Number of HSP's successfully gapped: 7
Length of query: 1511
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1400
Effective length of database: 8,063,393
Effective search space: 11288750200
Effective search space used: 11288750200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 118 (50.1 bits)