BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0213700 Os10g0213700|AK063872
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G50685.1  | chr3:18834272-18834748 REVERSE LENGTH=159           74   3e-14

>AT3G50685.1 | chr3:18834272-18834748 REVERSE LENGTH=159
          Length = 158

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 48/97 (49%)

Query: 67  WSLYXXXXXXXXXXXXXXXXXXXXXXVSYLVVAALIGWSLTTKVRTXXXXXXXXXXXXXX 126
           WSLY                      VSYLVV  ++GWSL TK +T              
Sbjct: 62  WSLYTLKTTGCGLPPGPAGLIGALEGVSYLVVVGIVGWSLYTKTKTGSGLPNGPFGLLGA 121

Query: 127 XXXVSYLAAAAIAVVFGFQFFEVGSLPGPLPSDQCFG 163
              +SYL+  AI VVFG QF + GS+PGPLPSDQCFG
Sbjct: 122 VEGLSYLSVLAILVVFGIQFLDNGSVPGPLPSDQCFG 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,047,329
Number of extensions: 41126
Number of successful extensions: 68
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)