BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0209300 Os10g0209300|Os10g0209300
(329 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380 429 e-121
AT5G57440.1 | chr5:23271518-23272900 REVERSE LENGTH=241 91 1e-18
AT4G25840.1 | chr4:13139026-13140719 FORWARD LENGTH=299 87 1e-17
AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056 62 5e-10
AT3G48420.1 | chr3:17929743-17931551 FORWARD LENGTH=320 58 9e-09
AT4G11570.1 | chr4:7004743-7005864 FORWARD LENGTH=374 56 2e-08
AT4G39970.1 | chr4:18536678-18538429 REVERSE LENGTH=317 53 3e-07
AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245 50 1e-06
>AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380
Length = 379
Score = 429 bits (1104), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/286 (72%), Positives = 240/286 (83%), Gaps = 2/286 (0%)
Query: 26 IKALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKESFSAIVGGDEVEKGKP 85
IK+LPGANRLI+HLK +GVP ALASNS +NIE+KIS H+GWKE FS IVG DEV KGKP
Sbjct: 92 IKSLPGANRLIRHLKCHGVPVALASNSSRANIESKISYHEGWKECFSVIVGSDEVSKGKP 151
Query: 86 SPDIFLEAAKRMNTNPPNCLVIEDSL--CCSWKSCRNACIAVPSVPKRTAEFSSADEVIN 143
SPDIFLEAAKR+ +P +CLVIEDS+ + K+ IAVPS+PK+T ++SADEVIN
Sbjct: 152 SPDIFLEAAKRLKKDPADCLVIEDSVPGVMAGKAAGTKVIAVPSLPKQTHLYTSADEVIN 211
Query: 144 SLLDVRPEKWGLRPFSDWIDDTLPIEPWFIGGSVIKGFGRGSKVLGIPTANLPAENFSDV 203
SLLD+R EKWGL PF DWI++TLPI+PW IGG VIKGFGRGSKVLGIPTANL ++++D
Sbjct: 212 SLLDIRLEKWGLPPFQDWIENTLPIDPWHIGGPVIKGFGRGSKVLGIPTANLSTKDYADE 271
Query: 204 LSEHTSRVYFGWAGLSTRGIYKMVMSIGWNPYFDNTEKTIEPWLLHDFGEDFYGEELRLV 263
L EH S VYFGWAGL+ RG++KMVMSIGWNPYF+N EKTIEPWLLHDF EDFYGEELRL+
Sbjct: 272 LVEHPSGVYFGWAGLAKRGVFKMVMSIGWNPYFNNKEKTIEPWLLHDFTEDFYGEELRLI 331
Query: 264 IVGYIRPEANFPSLESLIERIHEDARIAEKALNLPLYAKYTDSPYL 309
IVGYIRPEANF SLESLI +IHED +AEKAL+LP YAK+ PYL
Sbjct: 332 IVGYIRPEANFSSLESLIAKIHEDREVAEKALDLPSYAKFKGDPYL 377
>AT5G57440.1 | chr5:23271518-23272900 REVERSE LENGTH=241
Length = 240
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 9/147 (6%)
Query: 22 LWCNIKALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKESFSAIVGGD--E 79
L+ + +PGA+RLIKHL +P +A+ + + + K H+ +V GD E
Sbjct: 93 LFPTSELMPGASRLIKHLHVKNIPICIATGTHTRHYDLKTQRHRELFSLMHHVVRGDDPE 152
Query: 80 VEKGKPSPDIFLEAAKRMNTNPPN---CLVIEDSLCCSWKSCRNACIAVPSVPKRTAEFS 136
V++GKP+PD FL AA+R P + LV ED+ + +NA + V VP + S
Sbjct: 153 VKQGKPAPDGFLAAARRFKDGPVDSQKVLVFEDA-PSGVLAAKNAGMNVVMVPDPRLDIS 211
Query: 137 S---ADEVINSLLDVRPEKWGLRPFSD 160
AD++I SL+D +PE+WGL PF D
Sbjct: 212 HQDVADQIITSLVDFKPEEWGLPPFED 238
>AT4G25840.1 | chr4:13139026-13140719 FORWARD LENGTH=299
Length = 298
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 9/147 (6%)
Query: 22 LWCNIKALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKESFSAIVGGD--E 79
L+ +PGA+RL++HL G+P +A+ + + + K H+ +V GD E
Sbjct: 150 LFPTSDLMPGASRLLRHLHGKGIPICIATGTHTRHFDLKTQRHRELFSLMHHVVRGDDPE 209
Query: 80 VEKGKPSPDIFLEAAKRMN---TNPPNCLVIEDSLCCSWKSCRNACIAVPSVPKRTAEFS 136
V++GKP+PD FL A++R +P LV ED+ ++ +NA + V VP + S
Sbjct: 210 VKEGKPAPDGFLAASRRFEDGPVDPRKVLVFEDA-PSGVQAAKNAGMNVIMVPDSRLDKS 268
Query: 137 ---SADEVINSLLDVRPEKWGLRPFSD 160
AD+V+ SLLD +PE+WGL F D
Sbjct: 269 YCNVADQVLASLLDFKPEEWGLPSFQD 295
>AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056
Length = 1055
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 28 ALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKESFSAIVGGDEVEKGKPSP 87
PGA L+ K+ G+ A+AS++ ++A + F AIV D E KP+P
Sbjct: 161 GFPGALELVTECKNKGLKVAVASSADRIKVDANLKAAGLSLTMFDAIVSADAFENLKPAP 220
Query: 88 DIFLEAAKRMNTNPPNCLVIEDSLCC--SWKSCRNACIAVPSV 128
DIFL AAK + C+VIED+L + ++ CIAV +
Sbjct: 221 DIFLAAAKILGVPTSECVVIEDALAGVQAAQAANMRCIAVKTT 263
>AT3G48420.1 | chr3:17929743-17931551 FORWARD LENGTH=320
Length = 319
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 30 PGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKESFS-AIVGGDEVEKGKPSPD 88
PG +L+ +NGV A+ S S + A +SC G + + I GD V K KP P
Sbjct: 178 PGVAKLVDQALTNGVKVAVCSTSNEKAVSAIVSCLLGPERAEKIKIFAGDVVPKKKPDPA 237
Query: 89 IFLEAAKRMNTNPPNCLVIEDSL--CCSWKSCRNACIAVPSVPKRTAEFSSADEVINSLL 146
I+ AA+ + +P C+V+EDS + K+ CI S +F +AD V + +
Sbjct: 238 IYNLAAETLGVDPSKCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFENADAVFDCIG 297
Query: 147 DVRPEKWGL 155
D E++ L
Sbjct: 298 DPPEERFDL 306
>AT4G11570.1 | chr4:7004743-7005864 FORWARD LENGTH=374
Length = 373
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 7 PSGKKRDKMRKKEIVLWCN---IKALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISC 63
P +R RK+EI + + G+ + L +N +P AL S P +E +
Sbjct: 189 PVQVRRMAKRKEEIFKALHGGVYRLRDGSQEFVNVLMNNKIPMALVSTRPRETLENAVGS 248
Query: 64 HQGWKESFSAIVGGDEVEKGKPSPDIFLEAAKRMNTNPPNCLVIEDS--LCCSWKSCRNA 121
G ++ FS IV ++V +GKP P++F+ AA+ ++ P C+V +S + R
Sbjct: 249 I-GIRKFFSVIVASEDVYRGKPDPEMFIYAAQLLDFIPERCIVFGNSNQTIEAAHDGRMK 307
Query: 122 CIAVPSVPKRTAEFSSADEVINSL 145
C+AV S E +A+ V+ L
Sbjct: 308 CVAVAS-KHPIYELGAAELVVRRL 330
>AT4G39970.1 | chr4:18536678-18538429 REVERSE LENGTH=317
Length = 316
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 16 RKKEIVLWCNIKALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWK-----ES 70
R KEI+ +++ PG RL+ K+ G A+ S + S++ I C + +
Sbjct: 164 RYKEIIKSGSVEPRPGVIRLMDEAKAAGKKLAVCSAATKSSV---ILCLENLIDIERFQG 220
Query: 71 FSAIVGGDEVEKGKPSPDIFLEAAKRMNTNPPNCLVIEDSL 111
+ GD+V++ KP P I++ AA+++ + +CLV+EDS+
Sbjct: 221 LDCFLAGDDVKEKKPDPSIYITAAEKLGVSVKDCLVVEDSV 261
>AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245
Length = 244
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 26 IKALPGANRLIKHLKSNGVPAALASNSPGSNIEAKISCHQGWKESFSAIVGGDEVEKGKP 85
IK L G +L K ++ G+ A +N+P N E IS G + F A++ G E E KP
Sbjct: 107 IKPLDGLIKLTKWIEDRGLKRAAVTNAPKENAELMIS-KLGLTDFFQAVILGSECEFPKP 165
Query: 86 SPDIFLEAAKRMNTNPPNCLVIEDSL 111
P +L+A + +N + + LV EDS+
Sbjct: 166 HPGPYLKALEVLNVSKEHTLVFEDSI 191
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,177,662
Number of extensions: 378430
Number of successful extensions: 772
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 8
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)