BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0208800 Os10g0208800|Os10g0208800
         (603 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          118   8e-27
AT1G18560.1  | chr1:6385614-6388005 FORWARD LENGTH=691             64   3e-10

>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 21/207 (10%)

Query: 312 IATMGKSMKPKYDKYWEKSNMALSVACFLDPRFKRTLLEYYADKVYGESAPKHMADFMAI 371
           +  + K+M+ K DKYW   ++ L++A  +DPRFK  L+E+   K++GE A K++      
Sbjct: 488 VTGIAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDG 547

Query: 372 INKLFDTYASSQPTSKIPAATDVQNNPLVTKEYDGESDDELDADVLQYLRASTAPGIGTK 431
           I++LF  Y +      +P+       P  T    G++D   D D   Y+  +T  G   K
Sbjct: 548 IHELFTEYMA------LPS-------PQNTTSEGGKADGLSDFDT--YIMETT--GQNLK 590

Query: 432 SELEVYMDQPLLEWDIKDKSPFNILHWWSLKQHELPILSRLARDVLAIQVSTVASESAFS 491
           SEL+ Y+D+ LL         F++L WW   + + P LS++ARD+L+I VS  A +  F 
Sbjct: 591 SELDQYLDETLL----PRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFD 646

Query: 492 AGGRVIDPFRSCLDPEIVQALICTKDW 518
              R +D +++ L PE V+ALIC ++W
Sbjct: 647 MEPREMDEYKTSLRPETVEALICAREW 673




 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 1/143 (0%)

Query: 161 IIMHEYPFNIVEHEYFVDFIKSLRPTFPIKSRITVRKDILNMFLEEKKKMYEYFKTLSCR 220
           IIMH+YP ++V+H  FV F++S++P F   S   V+ D +  +L EK+ + +  + +  R
Sbjct: 173 IIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGR 232

Query: 221 FCTTMDMWTSNQNKCYMCITVHWIDDNWCMQKRIIKFMHVEGHHSGNNLCKVFYDSVLDW 280
           FC T+D WTS     Y+ IT H+ID +W +QK+++  +      +   L     + V +W
Sbjct: 233 FCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEW 292

Query: 281 NLDRKLLALTLDNASANDMAVED 303
            L+ KL  +T ++ ++N  AVE+
Sbjct: 293 GLEGKLFNVTFNHPASNS-AVEN 314



>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
          Length = 690

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 39/267 (14%)

Query: 263 HHSGNNLCKVFYDSVLDWNLDRKLLALTLDNASANDMAVEDWCHSSNTVIATMGKSMKPK 322
           H + N++C        + +L   L  L +DN S      +  CH+ +  + T  +SM  K
Sbjct: 422 HKTTNDMCT-------NKDLTVGLALLFMDNISEMITTCQKSCHNPDW-LRTCAESMAQK 473

Query: 323 YDKY-WEKSNMALSVACFLDPRFKRTLLEYYADKV----YGESAPKHMADFMAIINKLFD 377
              Y  +  N+   +   LDPR K    EY  + +    Y + A  H             
Sbjct: 474 ARSYNTQVCNVFTYITAILDPRIKT---EYIPETINLESYIDEARSH----------FIR 520

Query: 378 TYASSQPTSKIPAATDVQNNPLVTKEYDGESDDELDADVLQYLRASTAPGIGTKSELEVY 437
            Y+SS  TS + +    Q       E D    +   A+ +   +   +       EL  Y
Sbjct: 521 NYSSSHFTSSMTSGYRPQ-------EVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQY 573

Query: 438 MDQPLLEWDIKDKSPFNILHWWSLKQHELPILSRLARDVLAIQVSTVASESAFSAGGRVI 497
           + + ++          ++L WW +     P LS +ARD LA+Q ++ A E  F   G  I
Sbjct: 574 LSESIVPMQT------DVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEI 627

Query: 498 DPFRSCLDPEIVQALICTKDWTAASRK 524
           D  + C+  +  Q++IC + W  A  K
Sbjct: 628 DKQKYCMPHDSTQSVICIRSWIEAGMK 654



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,571,433
Number of extensions: 519669
Number of successful extensions: 1271
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1269
Number of HSP's successfully gapped: 4
Length of query: 603
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 499
Effective length of database: 8,255,305
Effective search space: 4119397195
Effective search space used: 4119397195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)