BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0206500 Os10g0206500|Os10g0206500
(188 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47635.1 | chr5:19307281-19307849 REVERSE LENGTH=165 89 1e-18
AT2G40113.1 | chr2:16750254-16750906 FORWARD LENGTH=170 88 2e-18
AT4G17215.1 | chr4:9655884-9656425 FORWARD LENGTH=151 63 7e-11
>AT5G47635.1 | chr5:19307281-19307849 REVERSE LENGTH=165
Length = 164
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 9/141 (6%)
Query: 30 FSPGELARIAGYGEEPVSTVVVSGQVACELCLCPGSDLLTFELPGAKVEVACETEGPNTQ 89
++ E+ +AGYGE+ +S+VV++G + C+ L + +PGA V + C T G +
Sbjct: 27 WTRTEMVEMAGYGEQKLSSVVITGSLLCD---TSRPHLHSIPIPGATVAIKCHT-GSKRR 82
Query: 90 ANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRPAASYRIRPX 149
+ + TDE G F LPS+LHA P LEN C +K + +P C S I
Sbjct: 83 SKWIKAVTDELGEFEIDLPSQLHAIPHLENTCFIKPVYVPRPYRC-----YNTSTNIHKP 137
Query: 150 XXXXXXADGFRAYTAGVIRLQ 170
+GFR YT+G IRLQ
Sbjct: 138 IKLVSSTNGFRVYTSGKIRLQ 158
>AT2G40113.1 | chr2:16750254-16750906 FORWARD LENGTH=170
Length = 169
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 78/150 (52%), Gaps = 21/150 (14%)
Query: 30 FSPGELARIAGYGEEPVSTVVVSGQVACELCLCPGSDLLTFELPGAKVEVACETEGPNTQ 89
+S E++ +AGYGE +S+VV++G + LC P + GA V + C T G +
Sbjct: 28 WSIREMSDMAGYGEHKLSSVVITGSL---LCNTP--------VSGATVAIKCHT-GLKQR 75
Query: 90 ANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRPAASY---RI 146
+ + + T++FG F HLPS LHA P LE AC VK + +P HR ++ I
Sbjct: 76 SKWIKSVTNDFGEFVIHLPSHLHAIPQLEKACFVKPIHVPKH-----YHRCYHTFSKSNI 130
Query: 147 RPXXXXXXXADGFRAYTAGVIRLQHGGTPS 176
+GFR YT+G I+L HGG S
Sbjct: 131 HKDIKLVSSRNGFRVYTSGTIKL-HGGHSS 159
>AT4G17215.1 | chr4:9655884-9656425 FORWARD LENGTH=151
Length = 150
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 30 FSPGELARIAGYGEEPVSTVVVSGQVACELCLCPGSDLLTFELPGAKVEVACETEGPNTQ 89
+S E+ +AGYGE+ +S+V+++ + + + GA + C T G +
Sbjct: 24 WSRDEMVEMAGYGEQKLSSVLLTASLLSSS---------SSPIHGATIGFKCHT-GHRRR 73
Query: 90 ANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRPAASYRIRPX 149
+ + T+E G F LPS LHA P L+ AC++K L +P C S +I
Sbjct: 74 SKWIKAVTNELGQFVIDLPSHLHAIPDLDKACIIKTLSVPKPYRC--------SSKIHRG 125
Query: 150 XXXXXXADGFRAYTAGVIRLQ 170
++G R YTAG I LQ
Sbjct: 126 IQLLSSSNGSRVYTAGNITLQ 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,758,689
Number of extensions: 141488
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 3
Length of query: 188
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 95
Effective length of database: 8,556,881
Effective search space: 812903695
Effective search space used: 812903695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)