BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0205300 Os10g0205300|AK107374
(351 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395 310 5e-85
AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352 168 4e-42
AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493 105 3e-23
AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526 84 1e-16
>AT1G27600.1 | chr1:9604083-9605881 REVERSE LENGTH=395
Length = 394
Score = 310 bits (795), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 165/340 (48%), Positives = 201/340 (59%), Gaps = 26/340 (7%)
Query: 17 FLLCFLLGFVAGLFPFAXXXXXXXXXXXXXXXATAIL-------VREXXXXXXXXXXXXX 69
FL+ FLLGFV GL PF + RE
Sbjct: 69 FLVFFLLGFVLGLTPFGKMEDVNGSDRFSFEIKQPYVEERLENRKREEAAVDAVSFVAET 128
Query: 70 XAAAEE-----RKLLLVVTPTRARPLQAYYLRRLAHTLRLAPSPLLWLVVESGAATRDTA 124
+E +KLL+VVTPT R +QAYYL R+A TLRL SP+LW+VVE A+ +T+
Sbjct: 129 ENGKKEVNFVPKKLLIVVTPTYNRAMQAYYLNRVAQTLRLVESPVLWIVVEGNVASFETS 188
Query: 125 ALLRGCGVMYRHLSSXXXXXXXXXXXXXXXXXXXXXXXSRARQRNTALDHIEHHRLHGIV 184
+LR GVMYRHL QRNTAL+HIE H+L GIV
Sbjct: 189 EILRKTGVMYRHLVCKRNMTSIKDRG--------------VHQRNTALEHIELHKLDGIV 234
Query: 185 YFADEDNVYSLDLFYHLRDIRSFGTWPVATLAPGKSKTILQGPVCEGSRVVGWHTTDRSK 244
YFAD+DN+YSL+LF LR I FGTWPVA LA K+K IL+GPVC GS+V+GWHT ++SK
Sbjct: 235 YFADDDNIYSLELFQSLRQISRFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSK 294
Query: 245 NQRRFHVDMSGFAFNSSKLWDAKNRGHQAWNYIRQLDTAKEGFQETAFIEQLVEDETHME 304
RRFHVDMSGFAFNS+ LWD K + RQLDT KEGFQET+FIEQ+V DE+ ME
Sbjct: 295 RLRRFHVDMSGFAFNSTILWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVVADESEME 354
Query: 305 GVPPGCSKIMNFHLHLEDKNAIYLNGWQTTQNLDVIIPLK 344
GVPP CS I+N+HLHL+ + Y GW +NL +I +K
Sbjct: 355 GVPPACSSILNWHLHLDALDVPYPQGWAIQKNLQALITMK 394
>AT2G37090.1 | chr2:15587671-15589223 REVERSE LENGTH=352
Length = 351
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 144/252 (57%), Gaps = 29/252 (11%)
Query: 76 RKLLLVVTP--TRARPLQAYYLRRLAHTLRLAPSPLLWLVVE--SGAATRDTAALLRGCG 131
R L++VVTP T+ R + LRR+A+TLRL P PLLW+VVE S + ++ +LR G
Sbjct: 114 RGLVIVVTPIITKDR-YKNVLLRRMANTLRLVPPPLLWIVVEKHSDGEEKSSSTMLRKTG 172
Query: 132 VMYRHLSSXXXXXXXXXXXXXXXXXXXXXXXSRARQRNTALDHIEHHRLHGIVYFADEDN 191
+MYR + QRN AL HIEHH+L GIV+FA +N
Sbjct: 173 IMYRRI--------------VFKEDFTSLESELDHQRNLALRHIEHHKLSGIVHFAGLNN 218
Query: 192 VYSLDLFYHLRDIRSFGTWPVATLAPGKSKTILQGPVCEGSRVVGWHTTD-RSKNQRRFH 250
+Y LD F +RDI FGTWP+A L+ + + +++GPVCE S+V+GWH ++ + +
Sbjct: 219 IYDLDFFVKIRDIEVFGTWPMALLSANRKRVVVEGPVCESSQVLGWHLRKINNETETKPP 278
Query: 251 VDMSGFAFNSSKLWDAKNRGHQAWNYIRQLDTAKEGFQETAFIEQLV-EDETHMEGVPP- 308
+ +S FAFNSS LWD + G + + D+ K +++Q+V ED+T ++G+P
Sbjct: 279 IHISSFAFNSSILWDPERWGRPSSVEGTKQDSIK-------YVKQVVLEDDTKLKGLPAQ 331
Query: 309 GCSKIMNFHLHL 320
CSKIM + L
Sbjct: 332 DCSKIMLWRLKF 343
>AT5G67230.1 | chr5:26822506-26824181 FORWARD LENGTH=493
Length = 492
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 46/307 (14%)
Query: 77 KLLLVVTPTRARPLQAYYLRRLAHTLRLAPSPLLWLVVESGAATRDTAALLRGCGVMYRH 136
+ ++VVTPT R QA +L + H+L L P L+W+VVE+G T +TA+ + G+ H
Sbjct: 152 RTVIVVTPTYVRTFQALHLTGVMHSLMLVPYDLVWIVVEAGGITNETASFIAKSGLKTIH 211
Query: 137 LSSXXXXXXXXXXXXXXXXXXXXXXXSRARQRNTALDHIEHHRLHGIVYFADEDNVYSLD 196
L + R AL + +L GIV FAD+ N++S++
Sbjct: 212 LGFDQKMPNTWEDRHKL----------ETKMRLHALRVVREKKLDGIVMFADDSNMHSME 261
Query: 197 LFYHLRDIRSFGTWPVATLA---------------PGKSK----TILQGPVCEGS-RVVG 236
LF ++ ++ FG V LA GK+K +QGP C S ++VG
Sbjct: 262 LFDEIQTVKWFGALSVGILAHSGNADELSSILKNEQGKNKEKPSMPIQGPSCNSSEKLVG 321
Query: 237 WHTTDRSKNQRRFHV-------------DMSGFAFNSSKLWDAKNRGHQAWNYIRQLDTA 283
WH + ++ V + SGF NS LW AW ++ L
Sbjct: 322 WHIFNTQPYAKKTAVYIDEKAPVMPSKMEWSGFVLNSRLLWKESLDDKPAW--VKDLSLL 379
Query: 284 KEGFQETAFIEQLVEDETHMEGVPPGCSKIMNFHLHLEDK-NAIYLNGWQTTQNLDVIIP 342
+G+ E LV+D + +E + +++ + L +E + ++ + GW L++ +P
Sbjct: 380 DDGYAEIESPLSLVKDPSMVEPLGSCGRRVLLWWLRVEARADSKFPPGWIIKSPLEITVP 439
Query: 343 LKKEARP 349
K+ P
Sbjct: 440 SKRTPWP 446
>AT4G36890.1 | chr4:17379631-17381627 REVERSE LENGTH=526
Length = 525
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 138/311 (44%), Gaps = 54/311 (17%)
Query: 74 EERKLLLVVTPTRARPLQAYYLRRLAHTLRLAPSPLLWLVVESGAATRDTAALLRGCGVM 133
+ K+++ VTPT R QA +L + H+L L P L+W+VVE+G AT +T ++ G+
Sbjct: 157 KSSKMVIAVTPTYVRTFQALHLTGVMHSLMLVPYDLVWIVVEAGGATNETGLIIAKSGLR 216
Query: 134 YRHLSSXXXXXXXXXXXXXXXXXXXXXXXSRARQRNTALDHIEHHRLHGIVYFADEDNVY 193
H+ R AL + +L GIV FAD+ N++
Sbjct: 217 TIHVGIDQRMPNTWEDRSKL----------EVFMRLQALRVVREEKLDGIVMFADDSNMH 266
Query: 194 SLDLFYHLRDIRSFGTWPVATLA-PGKSKTI----------------------LQGPVCE 230
S++LF +++++ FGT V LA G ++ + +QGP C
Sbjct: 267 SMELFDEIQNVKWFGTVSVGILAHSGNAEEMVLSMEKRKEMEKEEEEESSSLPVQGPACN 326
Query: 231 GS-RVVGWH--TTDRSKNQRRFHVD-----------MSGFAFNSSKLW-DAKNRGHQAWN 275
+ +++GWH T + ++D SGF NS LW +A+N+
Sbjct: 327 STDQLIGWHIFNTLPYAGKSAVYIDDVAAVLPQKLEWSGFVLNSRLLWEEAENKPE---- 382
Query: 276 YIRQLDTAKEGFQETAFIEQLVEDETHMEGVPPGCSKIMNFHLHLEDK-NAIYLNGWQTT 334
+++ + E + + L++D + +E + +++ + L +E + ++ + GW
Sbjct: 383 WVKDFGSLNENEGVESPLS-LLKDPSMVEPLGSCGRQVLLWWLRVEARADSKFPPGWIID 441
Query: 335 QNLDVIIPLKK 345
L++ + K+
Sbjct: 442 PPLEITVAAKR 452
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,119,310
Number of extensions: 223363
Number of successful extensions: 607
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 6
Length of query: 351
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,364,969
Effective search space: 2099607219
Effective search space used: 2099607219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)