BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0195100 Os10g0195100|Os10g0195100
(1299 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G40087.1 | chr1:14999762-15001868 REVERSE LENGTH=391 84 6e-16
AT3G30200.1 | chr3:11827752-11834262 REVERSE LENGTH=511 81 4e-15
>AT1G40087.1 | chr1:14999762-15001868 REVERSE LENGTH=391
Length = 390
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 25/254 (9%)
Query: 888 IPVACGDWRDVDVKDKLKVWEDVQKHYEINEYGLH--FVLETSHMIWKDYKADLKKKHFD 945
+P+ DWR V K + W +Q + ++ + +V+ KD K +++
Sbjct: 98 LPINYTDWRLVSPHIKDRAWAVIQSKFRFDDPMMRKDYVMGALGSKCKDVKLRFWREYKR 157
Query: 946 ANLTDEELMDRRDLRVNEAQWKWLI-----NHWRSPEAVARSIRGKANRGMLRMLHTAGS 1000
NL E + R +V E QW L+ + WR + R N+ M H G
Sbjct: 158 NNLN--ETLQNRPEKVPEDQWSHLVHLIFTDKWRKMQE-----RNTKNQKNHIMPHLCGR 210
Query: 1001 KSHARVGHDMGVKTGRPPRRDEVFVETHKRKNGEIIP-EAAETVEMLKEAAEVNPELK-N 1058
KS +R ++ +KTG+ P R E F+E+ K+ +G + EA E L +NP++ N
Sbjct: 211 KSFSRKRDEIKIKTGKTPCRAEFFIESRKKHDGSFVSDEAKLRAEALTTLLNLNPQVTYN 270
Query: 1059 KTIQEGDLYSRVCGTKEPRGRVRVLGKGPTPQDVGTPGTRSRMPTRLQLEIESHR---QT 1115
T D YS+V G + P GRVR +G+GPTP + R TR Q +IE+ Q
Sbjct: 271 GTASLDDEYSQVFGPERP-GRVRCVGRGPTPSRL----VRHSNATRRQ-DIENSELVAQL 324
Query: 1116 KQEVVCLNKRMDDM 1129
K +V L +++ M
Sbjct: 325 KTQVKTLGDQVNAM 338
>AT3G30200.1 | chr3:11827752-11834262 REVERSE LENGTH=511
Length = 510
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 17/211 (8%)
Query: 888 IPVACGDWRDVDVKDKLKVWEDVQKHYEINEYGLH--FVLETSHMIWKDYKADLKKKHFD 945
+P+ DWR V K + W +Q + ++ + +V+ KD K ++H
Sbjct: 218 LPINYTDWRLVSPHIKDRAWAVIQSKFRFDDPMMRKDYVMGALGSRCKDVKLRFWREHKR 277
Query: 946 ANLTDEELMDRRDLRVNEAQWKWLI-----NHWRSPEAVARSIRGKANRGMLRMLHTAGS 1000
NL E ++ R +V E QW L+ + WR + R N+ M H G
Sbjct: 278 NNLN--ETLENRPEKVPEDQWSHLVHLRFTDKWRKMQE-----RNTKNQKNHIMPHLCGR 330
Query: 1001 KSHARVGHDMGVKTGRPPRRDEVFVETHKRKNGEIIPEAAETVEM-LKEAAEVNPELK-N 1058
KS +R ++ +KTG+ P R E F+E+ K+ +G + + A+ + L +NP++ N
Sbjct: 331 KSFSRKRDEIKIKTGKTPCRVEFFIESRKKHDGSFVSDEAKLRAIALTTLLNLNPQVTYN 390
Query: 1059 KTIQEGDLYSRVCGTKEPRGRVRVLGKGPTP 1089
T D YS+V G + P GRV +G+GPTP
Sbjct: 391 GTASLDDEYSQVFGPERP-GRVHCVGRGPTP 420
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 28,537,863
Number of extensions: 1237613
Number of successful extensions: 3214
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3210
Number of HSP's successfully gapped: 2
Length of query: 1299
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1189
Effective length of database: 8,090,809
Effective search space: 9619971901
Effective search space used: 9619971901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)