BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0185200 Os10g0185200|Os10g0185200
         (109 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10290.1  | chr1:3370774-3377120 FORWARD LENGTH=915             64   1e-11
AT1G59610.1  | chr1:21893413-21900780 FORWARD LENGTH=921           62   4e-11

>AT1G10290.1 | chr1:3370774-3377120 FORWARD LENGTH=915
          Length = 914

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 41/47 (87%)

Query: 32 MDAVEELTQLSESMRQVASLLADDDPCDDSAPRRLSTFVNAVALGNV 78
          M+A++EL+QLS+SM+Q ASLLAD+DP + S+ +R +TF+N VALGNV
Sbjct: 1  MEAIDELSQLSDSMKQAASLLADEDPDETSSSKRPATFLNVVALGNV 47



>AT1G59610.1 | chr1:21893413-21900780 FORWARD LENGTH=921
          Length = 920

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query: 32 MDAVEELTQLSESMRQVASLLADDDPCDDSAPRRLSTFVNAVALGNV 78
          M+A++EL+QLS+SMRQ ASLLAD+DP + S+ RR +T +N VALGNV
Sbjct: 1  MEAIDELSQLSDSMRQAASLLADEDPDETSSSRRPATSLNVVALGNV 47



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,269,089
Number of extensions: 73446
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 11,106,569
Length adjustment: 78
Effective length of query: 31
Effective length of database: 8,968,121
Effective search space: 278011751
Effective search space used: 278011751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)