BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0184300 Os10g0184300|AK058856
(105 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39080.1 | chr4:18209513-18214752 FORWARD LENGTH=822 181 6e-47
AT2G21410.1 | chr2:9162703-9168141 FORWARD LENGTH=822 179 3e-46
AT2G28520.1 | chr2:12210026-12215532 FORWARD LENGTH=818 161 6e-41
>AT4G39080.1 | chr4:18209513-18214752 FORWARD LENGTH=822
Length = 821
Score = 181 bits (460), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/105 (80%), Positives = 95/105 (90%)
Query: 1 VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL 60
VLGAVSNTASYLRLWALSLAHSELS+VFYEKVL+L+WGYNN ILI+G ++F+FAT+GVL
Sbjct: 717 VLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNPLILIVGVLVFIFATVGVL 776
Query: 61 LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED 105
LVMETLSAFLHALRLHWVEFQNKFYEGDGYKF PF F E++
Sbjct: 777 LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFAPFTFIFTANEDE 821
>AT2G21410.1 | chr2:9162703-9168141 FORWARD LENGTH=822
Length = 821
Score = 179 bits (454), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 82/105 (78%), Positives = 97/105 (92%)
Query: 1 VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL 60
VLGAVSNTASYLRLWALSLAHSELS+VFYEKVL+++WG+NN+FI I+G ++F+FAT+GVL
Sbjct: 717 VLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLMAWGFNNVFIWIVGILVFIFATVGVL 776
Query: 61 LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASIIEEED 105
LVMETLSAFLHALRLHWVE+QNKFYEGDGYKF PF F + E++
Sbjct: 777 LVMETLSAFLHALRLHWVEYQNKFYEGDGYKFAPFTFTLVGNEDE 821
>AT2G28520.1 | chr2:12210026-12215532 FORWARD LENGTH=818
Length = 817
Score = 161 bits (408), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/100 (78%), Positives = 87/100 (87%)
Query: 1 VLGAVSNTASYLRLWALSLAHSELSTVFYEKVLVLSWGYNNIFILIIGAVIFLFATIGVL 60
VLG+VSNTASYLRLWALSLAHSELSTVFYEKVL+L+WGY NI I +IG +F FAT +L
Sbjct: 718 VLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYENILIRLIGVAVFAFATAFIL 777
Query: 61 LVMETLSAFLHALRLHWVEFQNKFYEGDGYKFVPFAFASI 100
L+METLSAFLHALRLHWVEF KF+ GDGYKF PF+FA I
Sbjct: 778 LMMETLSAFLHALRLHWVEFMGKFFNGDGYKFKPFSFALI 817
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.142 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,125,874
Number of extensions: 70288
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 3
Length of query: 105
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 30
Effective length of database: 9,050,369
Effective search space: 271511070
Effective search space used: 271511070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)