BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0178200 Os10g0178200|AK106781
(199 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07510.1 | chr3:2393895-2394464 REVERSE LENGTH=190 164 2e-41
AT2G01580.1 | chr2:265181-265756 REVERSE LENGTH=192 114 2e-26
AT5G05950.1 | chr5:1788814-1789341 FORWARD LENGTH=176 111 3e-25
AT3G46890.1 | chr3:17266416-17267030 REVERSE LENGTH=205 75 2e-14
>AT3G07510.1 | chr3:2393895-2394464 REVERSE LENGTH=190
Length = 189
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 34 VHVTALDGVVNVNSLFTVAVFVGLSLADPGELRSLAGDASCDAGQGVARXXXXXXXXXXX 93
VHV+ALDG+VNVNSLFT+AVFVGLSLA PG+ SL +SCDA VA+
Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGLSLATPGQ-HSLEQRSSCDASADVAKKLLVFEVVSFS 84
Query: 94 XXXXXXXXXQGLKLALNLINSKDPHDTLHAHIDARLLRLGMLASAVGSVVGCVFLMVSMV 153
QGLKLALNL+NSKD ++ AHI+ ++LR GM+ASAVGSV+GC+FLM+SMV
Sbjct: 85 FFLFSSLVAQGLKLALNLLNSKDVNEIFRAHINIKVLRWGMMASAVGSVMGCLFLMLSMV 144
Query: 154 MVVQIRLGTLGCATNRXXXXXXXGLVGLVTTALAVYVGTVFYTFTH 199
V+QIRLG L C + + LV LV++AL +Y+ T Y F H
Sbjct: 145 NVIQIRLGLLSCGS-KSAAQAVATLVTLVSSALLIYISTAIYAFWH 189
>AT2G01580.1 | chr2:265181-265756 REVERSE LENGTH=192
Length = 191
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 38 ALDGVVNVNSLFTVAVFVGLSLADPGELRSLAGDASCDAGQGVARXXXXXXXXXXXXXXX 97
ALDG+V+ NSLFTVAVFVG+S P +L +L C AG+ V R
Sbjct: 32 ALDGIVSANSLFTVAVFVGISFDQPSDL-TLTDRTECSAGRDVERDLVVFEVISFAFFLF 90
Query: 98 XXXXXQGLKLALNLINSKDPHDTLHAHIDARLLRLGMLASAVGSVVGCVFLMVSMVMVVQ 157
QG+KLA+NL+NSK+ + A+I+ +LR G++ +A GS++GCVFL++S+V V+Q
Sbjct: 91 SSLVAQGMKLAINLLNSKETDEVFKANINRDVLRFGVVGAAGGSILGCVFLLLSIVDVIQ 150
Query: 158 IRLGTLGCATNRXXXXXXXGLVGLVTTALAVYVGTVFYTF 197
+RLG L C N LV LV++AL+VY+ TVFY+F
Sbjct: 151 LRLGLLSCG-NALAIHTVLVLVVLVSSALSVYIFTVFYSF 189
>AT5G05950.1 | chr5:1788814-1789341 FORWARD LENGTH=176
Length = 175
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 93/174 (53%), Gaps = 5/174 (2%)
Query: 31 TTSVHVTALDGVVNVNSLFTVAVFVGLSLADPGELRSLAGDASCDAGQGVARXXXXXXXX 90
TTS+H+TALDG+VNVNSLFT+AVF+GL+ SL D +C +A
Sbjct: 2 TTSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVY 61
Query: 91 XXXXXXXXXXXXQGLKLALNLINSKDPH-----DTLHAHIDARLLRLGMLASAVGSVVGC 145
GLK A+ L + H D + +++ LR GM+ S +GSV GC
Sbjct: 62 SFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVTSGLGSVCGC 121
Query: 146 VFLMVSMVMVVQIRLGTLGCATNRXXXXXXXGLVGLVTTALAVYVGTVFYTFTH 199
FLM++++ VVQI+LGTLGC + LV LV +AL +YV + Y FT
Sbjct: 122 GFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAFTR 175
>AT3G46890.1 | chr3:17266416-17267030 REVERSE LENGTH=205
Length = 204
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 31 TTSVHVTALDGVVNVNSLFTVAVFVGL------------SLADPGELRSLAGDASCDAGQ 78
TT +HVTA+DG+VNVNSLF++A+F+GL S ++ LR +
Sbjct: 18 TTLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPALAE 77
Query: 79 GVARXXXXXXXXXXXXXXXXXXXXQGLKLALNLINS---KDPHDTLHA---HIDARLLRL 132
+ Q ++ N ++ L+A ++ LR+
Sbjct: 78 RLVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNLAALRV 137
Query: 133 GMLASAVGSVVGCVFLMVSMVMVVQIRLGTLGCATNRXXXXXXXGLVGLVTTALAVYVGT 192
G++AS V SV+GC FL +++V +VQI+LG L C + LV LV +AL +YV
Sbjct: 138 GIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALIIYVFL 197
Query: 193 VFYTFTH 199
V Y F +
Sbjct: 198 VLYAFIY 204
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,930,490
Number of extensions: 78916
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 4
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)