BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0177200 Os10g0177200|AK064016
(386 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38810.2 | chr4:18115607-18118860 REVERSE LENGTH=376 365 e-101
AT2G44310.1 | chr2:18309285-18309713 FORWARD LENGTH=143 50 2e-06
>AT4G38810.2 | chr4:18115607-18118860 REVERSE LENGTH=376
Length = 375
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/340 (52%), Positives = 239/340 (70%), Gaps = 4/340 (1%)
Query: 28 DGSEILQLVENKEAFGKFVEQKFRLLDADGDGRLSVRELQPAVADIGAAIGLPARGSSAQ 87
DGS+I++LVEN++ F KFVEQKF+ LD D DG+LSV ELQPAVADIGAA+GLPA+G+S
Sbjct: 16 DGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGTSPD 75
Query: 88 ADHIYSEVLNEFTKGKKESVSKSEFQRVLSDILLGMAAGLKRDPIVILRINGEDLNEFVE 147
+DHIYSEVLNEFT G +E VSK+EF+ VLSDILLGMAAGLKRDPIVILR++GEDL+EFV
Sbjct: 76 SDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGEDLSEFVH 135
Query: 148 SPRYEPEMAAIFSQVESG-NSTLQQCMLAAIRQLTVDHGMPPASDSWVMENIIEPALQEL 206
P YE E ++FS++ S +++L+ C++ A++ L+VDHGMPP++D WVM NI+EP +
Sbjct: 136 GPGYEIESISVFSELSSSKDASLRDCIVKALQSLSVDHGMPPSNDPWVMSNIVEPIVDSC 195
Query: 207 --HGDNLEQPVTQEVFFQEFRKFLAILTQRLQGHPVIVAHTENTFDGNGIXXXXXXXXXX 264
D E+ +QE F + F++ + + QRL PVIVAH+ENTFDG+GI
Sbjct: 196 LDEEDKREKSASQERFLEAFKRVVESVAQRLNEQPVIVAHSENTFDGSGIRRLLSNKFEF 255
Query: 265 XXXXDCVWRGVPKEKD-RTAKQYIRVAFDRMADSINLPPYGXXXXXXXXXXXXFKMAKAE 323
+ +PK++ + +K Y+R D +A S LPP G KM +
Sbjct: 256 DKALNVAMETIPKDRQGKVSKGYLRAVLDTVAPSATLPPIGAVSQMDNMIMEALKMVNGD 315
Query: 324 DGKAVDETEFKKLLTEILGAVMLQLDGNPISVSTNSVLHE 363
DG V E EFKK + EILG++MLQL+G+PISVS+NSV+HE
Sbjct: 316 DGNVVKEEEFKKTMAEILGSIMLQLEGSPISVSSNSVVHE 355
>AT2G44310.1 | chr2:18309285-18309713 FORWARD LENGTH=143
Length = 142
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 28 DGSEILQLVENKEAFGKFVEQKFRLLDADGDGRLSVRELQPAVAD---IGAAIGLPARGS 84
DGS + V+++E F K V+++F LD + DG LS EL+ A + + G+
Sbjct: 7 DGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFGVDVVTP 66
Query: 85 SAQADHIYSEVLNEFTKGKKESVSKSEFQRVLSDILLGMAAGLKRDPIVILRINGED 141
+ ++Y + +F + SV EF+ + I+L +A GL PI ++ + +D
Sbjct: 67 QDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDDDDD 123
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,522,575
Number of extensions: 241516
Number of successful extensions: 730
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 725
Number of HSP's successfully gapped: 3
Length of query: 386
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 286
Effective length of database: 8,364,969
Effective search space: 2392381134
Effective search space used: 2392381134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)