BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0169800 Os10g0169800|AK067281
         (387 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12230.1  | chr4:7284645-7287348 FORWARD LENGTH=393            465   e-131

>AT4G12230.1 | chr4:7284645-7287348 FORWARD LENGTH=393
          Length = 392

 Score =  465 bits (1196), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 215/291 (73%), Positives = 250/291 (85%), Gaps = 3/291 (1%)

Query: 16  DYVYFKSVVPLHKISIGPKLWRYYDFGPKTVPPLVCIPGIAGTADVYYKQIMSLSMKGYR 75
           DYVYFKS VPLHKI IG K WRYYDFGPKTVPPL+CIPGIAGTADVYYKQIM+LSMKGYR
Sbjct: 10  DYVYFKSQVPLHKIPIGTKQWRYYDFGPKTVPPLICIPGIAGTADVYYKQIMALSMKGYR 69

Query: 76  VMSIDVPQVWNHQEWIHSFEKFLDSMNIHHVHIYGTSLGGFLAQIFAQHRPRRVKSLVLS 135
           V+S+D+P+VWN+ EWI +FEKFLD++++HHVH+YGTSLGGFLAQ+FA HRPRRVKSLVLS
Sbjct: 70  VISVDIPRVWNYHEWIQAFEKFLDTIDVHHVHLYGTSLGGFLAQLFAHHRPRRVKSLVLS 129

Query: 136 NTFLETHKFAAATPWSPVVNWTPSFLLKRYLLTGIRDGPHEPFIADSVDFVVSQVETXXX 195
           NT+L+T  FA A PW+P V+WTPSFLLKRY+LTGIRDGPHEPFIADSVDF VSQVET   
Sbjct: 130 NTYLDTRTFATAMPWAPFVSWTPSFLLKRYVLTGIRDGPHEPFIADSVDFAVSQVETLSK 189

Query: 196 XXXXXXXMLNVNVASVGSLMLPDSLITIMDTNDYSAVPQQLKDQVNERYPGARRAVLKTG 255
                   L V+ ASVGSL+L DS +TIMDTNDY A+PQ LKD++ ERYP ARRA LK+G
Sbjct: 190 DDLASRLTLTVDAASVGSLLLSDSSVTIMDTNDYCAIPQHLKDELTERYPEARRAYLKSG 249

Query: 256 GDFPFLSRPDEVNLYLQLHLRRVGVEPRPDLVQGFTR---NGSAGSSKDQK 303
           GDFPFLSRPDEVNL+LQLHLRRVGVEPRP++V+   +   +G+ GSS+ +K
Sbjct: 250 GDFPFLSRPDEVNLHLQLHLRRVGVEPRPEVVKSIPKGGADGTDGSSQSKK 300



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,429,033
Number of extensions: 281149
Number of successful extensions: 577
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)