BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0159700 Os10g0159700|AK107162
         (197 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27670.1  | chr4:13819048-13819895 REVERSE LENGTH=228           53   8e-08

>AT4G27670.1 | chr4:13819048-13819895 REVERSE LENGTH=228
          Length = 227

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 24/120 (20%)

Query: 81  WQVAENKDEVSLWFDVPGLSPADLIVEIDEDVLVIXXXXXASPKSNYNTPTSGAIADHQE 140
           W + E + E+ + FD+PGLS  D+ + ++++VLVI                       +E
Sbjct: 129 WDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKG------------------EQKKE 170

Query: 141 ATADEFSGGGIYA---RLLLPAGYSREGVQAKLTSGELKLTIGKVKESVRRKINVDISVK 197
            + D +SG  + +   RL LP    ++ ++A+L +G L +TI K K  V RK+ +D+ ++
Sbjct: 171 DSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTK--VERKV-IDVQIQ 227



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,214,284
Number of extensions: 178883
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)